View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1630_low_2 (Length: 558)
Name: NF1630_low_2
Description: NF1630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1630_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 305 - 539
Target Start/End: Original strand, 52947969 - 52948205
Alignment:
| Q |
305 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcagttgtatttcaccaagggggtgaatttgtta |
404 |
Q |
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| T |
52947969 |
gtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtcaattgtatttcaccatgggggtgaatttgtta |
52948068 |
T |
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| Q |
405 |
gggactacattttgtattacactgggggtcaagaacacgtagt--taatgggattgatagggataggtggtgttactttgaagctactggtatactaaaa |
502 |
Q |
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| T |
52948069 |
cggactatattttgtattacactgggggtcaagaacacgtagtagtaatgggattgatagggataggtggtgttacttcgaagcgactggtatactaaaa |
52948168 |
T |
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| Q |
503 |
gagttaggttatgatgatcaccttaagtatcgtttat |
539 |
Q |
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| T |
52948169 |
gagttaggttatgatgatcaccttaagtatcatttat |
52948205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 52947692 - 52947907
Alignment:
| Q |
29 |
ttgacggtgaatcacggcaacaaagtgtaatcgatggtcaacgaaggtttgtgaaggtgatcgacggtagaagaagcggtttttggcttgcgattgaggt |
128 |
Q |
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| T |
52947692 |
ttgacggtgaatcacggcaacgaagtgtaatcaacagttagcgaaggtttttgaaggtgatcgacggtagaagaagcggtttttggcttgcgattgaggt |
52947791 |
T |
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| Q |
129 |
agaacatttttttcatatcctct--gnnnnnnnnncttgttatattttgtttgttgtttgaatcaaaaaatctttgaatgttagtttgtaatgatgtaaa |
226 |
Q |
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| T |
52947792 |
agaaca-ttctaacctatcctcttatttttttcttcttcttatcttttgtttgttgtttgaatcaaaaaatctttgaatgctagtttataatgatgtaaa |
52947890 |
T |
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| Q |
227 |
agagtagaatggatgtc |
243 |
Q |
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| T |
52947891 |
agagtagaatggatgtc |
52947907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 532
Target Start/End: Original strand, 31810722 - 31810799
Alignment:
| Q |
455 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtat |
532 |
Q |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtat |
31810799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 531
Target Start/End: Original strand, 19393467 - 19393551
Alignment:
| Q |
447 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagta |
531 |
Q |
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| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta |
19393551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 532
Target Start/End: Original strand, 7797472 - 7797557
Alignment:
| Q |
447 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtat |
532 |
Q |
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| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtat |
7797557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 532
Target Start/End: Complemental strand, 30320491 - 30320414
Alignment:
| Q |
455 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtat |
532 |
Q |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtat |
30320414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 532
Target Start/End: Original strand, 22055067 - 22055144
Alignment:
| Q |
455 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtat |
532 |
Q |
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| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtat |
22055144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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