View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1630_low_3 (Length: 430)
Name: NF1630_low_3
Description: NF1630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1630_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 51856616 - 51857028
Alignment:
| Q |
1 |
ttgcaggaccaatttcactagaatcatgtcttattattatgttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856616 |
ttgcaggaccaatttcactagaatcatgtcttattattatgttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaa |
51856715 |
T |
|
| Q |
101 |
taataaaaattaaactttaatttttcttaacacgacacaaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatg |
200 |
Q |
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| T |
51856716 |
taataaaaattaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactacatg |
51856815 |
T |
|
| Q |
201 |
ataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataat |
300 |
Q |
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| T |
51856816 |
ataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataattggaacttcaaaataacaacaaatggaaaacataat |
51856915 |
T |
|
| Q |
301 |
aaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaag |
400 |
Q |
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| T |
51856916 |
aaagattatcatgcaacgcatcgttggatctagaaagcaataaaaag-aattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaag |
51857014 |
T |
|
| Q |
401 |
ggttaccacttacc |
414 |
Q |
| |
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| T |
51857015 |
ggttaccacttacc |
51857028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 51856538 - 51856569
Alignment:
| Q |
65 |
caatataagagtggcttgttacccttcaaact |
96 |
Q |
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| T |
51856538 |
caatataagagtggcttgttacccttcaaact |
51856569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 65 - 412
Target Start/End: Original strand, 8945724 - 8946060
Alignment:
| Q |
65 |
caatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacgacacaaataagaaaaagggaaaataaagaa |
164 |
Q |
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| T |
8945724 |
caatataagagtggcttgttacccttcaaactttaataataaaaatcaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaa |
8945823 |
T |
|
| Q |
165 |
agggaactagatctagaagaaaacctgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataat |
264 |
Q |
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| T |
8945824 |
agggaactagatctagaagataacctgtactacatgataatgaagggtcgttctaaaaatcatttagctccttcacgatgtgctttgaagccgttataat |
8945923 |
T |
|
| Q |
265 |
tgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaa |
364 |
Q |
| |
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| T |
8945924 |
tgaaacttcaaaataac-----------aacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaatgaaattgaaaggaaaaaa |
8946012 |
T |
|
| Q |
365 |
gtttcaattgggatatggaacaaaagataaatgaagggttaccactta |
412 |
Q |
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| T |
8946013 |
gtttcaattgggatatggaacaaaagataaatgaagggttaccactta |
8946060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 306
Target Start/End: Original strand, 43262898 - 43263171
Alignment:
| Q |
34 |
ttattatgttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttctt-aaca |
132 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
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| T |
43262898 |
ttattatgttgcctgttcaataatcaacaaccaatatgagagtggattgttacccttcaaactttaataataaaaattaaacttttctttttttttaaca |
43262997 |
T |
|
| Q |
133 |
cgacacaaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatgataatgaagggtccttctaaaaatcatttagc |
232 |
Q |
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| T |
43262998 |
cagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactgcatgatgttgaagggtccttctacaaatcctttagc |
43263097 |
T |
|
| Q |
233 |
tccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
306 |
Q |
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|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43263098 |
tcattcacgatgcactttgaagccgtaataattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
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