View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1630_low_4 (Length: 297)
Name: NF1630_low_4
Description: NF1630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1630_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1936834 - 1936546
Alignment:
| Q |
1 |
tatcgtagattggcacaccaagaatagtacaatgggagagaagaacaattgagcatgtgctcgaaatgaaacaatgatgttcacataaacatgtgctcaa |
100 |
Q |
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| T |
1936834 |
tatcgtagattggcacaccaagaatagtacaatgggagagaagaacaattgagcatgtgctcgaaatgaaacaatgatgttcacataaacatgtgctcaa |
1936735 |
T |
|
| Q |
101 |
aattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctcta-nnnnnnnnnnngctaaattctct |
199 |
Q |
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| T |
1936734 |
aattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctctattttttttttgtgctaaattctct |
1936635 |
T |
|
| Q |
200 |
cttttttgtgttaaactcgtg-nnnnnnnngtattaaatgtttaggacaggagtctcaatacatcagttttatggatttaatgatgatg |
287 |
Q |
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| T |
1936634 |
cttttttgtgttaaactcgtgtttttttttgtgttaaatgtttaggacacgagtctcaatacatcagttttatggatttaatgatgatg |
1936546 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 34819695 - 34819621
Alignment:
| Q |
100 |
aaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctc |
174 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| |
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| T |
34819695 |
aaattaataaaaaataccacatatgagtggtacaagagtggtttgccacataagcatgtttatgaatcaattctc |
34819621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 37864024 - 37863950
Alignment:
| Q |
100 |
aaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctc |
174 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| |
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| T |
37864024 |
aaattaataaaaaataccacatatgagtggtacaagagtggtttgccacataagtatgtttatgaatcaattctc |
37863950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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