View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1630_low_6 (Length: 281)
Name: NF1630_low_6
Description: NF1630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1630_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 51856555 - 51856281
Alignment:
| Q |
1 |
caagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagc |
100 |
Q |
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| T |
51856555 |
caagccactcttatattgctgtttttttagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagc |
51856456 |
T |
|
| Q |
101 |
aatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856455 |
aatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaat |
51856356 |
T |
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| Q |
201 |
tctttttatgacattctctacctattttcccttttgacaatgtagatacttannnnnnngctctgtgatgatgtc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51856355 |
tctttttatgacattctctacctattttcccttttgacaatgtagatacttatttttttgctctgtgatgatgtc |
51856281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8945741 - 8945467
Alignment:
| Q |
1 |
caagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagc |
100 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945741 |
caagccactcttatattgctgtttttttagacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagc |
8945642 |
T |
|
| Q |
101 |
aatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaat |
200 |
Q |
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| T |
8945641 |
aatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaat |
8945542 |
T |
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| Q |
201 |
tctttttatgacattctctacctattttcccttttgacaatgtagatacttannnnnnngctctgtgatgatgtc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8945541 |
tctttttatgacattctctacctattttcccttttgacaatgtagatacttatttttttgctctgtgatgatgtc |
8945467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
41 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
140 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
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| Q |
141 |
ttacagaaaaataaaat |
157 |
Q |
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||||||||||| ||||| |
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| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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