View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16310_high_3 (Length: 383)
Name: NF16310_high_3
Description: NF16310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16310_high_3 |
 | |
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| [»] scaffold0223 (1 HSPs) |
| | |
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| [»] scaffold0665 (1 HSPs) |
| | |
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| [»] scaffold0356 (1 HSPs) |
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| [»] scaffold0696 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 15556798 - 15557165
Alignment:
| Q |
1 |
tcctccttccacccctgcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
15556798 |
tcctccttccacccctgcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgcaccgattgctgcttctgtg |
15556897 |
T |
|
| Q |
101 |
cagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15556898 |
cagtctgcaaaaccctccttcgcacaagctttacgtggcactccgtcaacggctgatcctctcatgttgccctctatccgtggagaaacgctatccatat |
15556997 |
T |
|
| Q |
201 |
caattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaacca |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
15556998 |
caattactccc-actgcttactccagggggttagatttctgtaaaattaacctctgtggtcgtttggtattaaacaaaggtgacaaaccctatgcaacca |
15557096 |
T |
|
| Q |
301 |
aaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttcccttggcc |
369 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15557097 |
aatacatgactgccaaacttcagaaattatggaaagtcaaaggaccatgtcatatgctttcccttggcc |
15557165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 15166 - 14803
Alignment:
| Q |
1 |
tcctccttccacccctgcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtg |
100 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
15166 |
tccttcttccatccatgcggcgactccatcctgcaatagtaatgatgctacagctgttccgacacaaattgttgctcctgctccgattgccgcacctgtg |
15067 |
T |
|
| Q |
101 |
cagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatat |
200 |
Q |
| |
|
| ||||||||||||||| |||| ||||| |||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
15066 |
ccgtctgcaaaaccctcattcgcacaagctttacgtggcactctgtcaacggctgatcctctcccgctgccctctatccgtggagaaacgctatccatat |
14967 |
T |
|
| Q |
201 |
caattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaacca |
300 |
Q |
| |
|
||||||| ||| || ||||||||| ||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14966 |
caattacaccc-accgcttactcccgggggttagatttctataaaattaactttcgtggtcgtttggtattaaacaaaggcgacaaaccctatgcaacca |
14868 |
T |
|
| Q |
301 |
aaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccctt |
365 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
14867 |
aagacatcactgccaaacttcataaattatggaaagtcaaaggaccatggcatatgctttccctt |
14803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 24025535 - 24025900
Alignment:
| Q |
1 |
tcctccttccacccctgcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtg |
100 |
Q |
| |
|
|||||||||||||| ||| | || ||| || ||||||||| || ||| || |||||| |||||| | |||| || ||||| ||| | ||| | |||| |
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|
| T |
24025535 |
tcctccttccacccttgctgtgataccacccagcaatagtattgcagctgcaactgtcctgacacacaatgtttcttctgcttagatggttgcgcctgtg |
24025634 |
T |
|
| Q |
101 |
cagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatat |
200 |
Q |
| |
|
|| |||||||| |||| || | ||| || |||||||| ||||||||||| ||||| || || ||| ||||||||| |||||||||||||| |||||| |
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|
| T |
24025635 |
tagactgcaaaatcctcttttgcacaggtgttacgtggtactccgtcaactactgattctatctcgtttccctctatctgtggagaaacgctagccatat |
24025734 |
T |
|
| Q |
201 |
caattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaacca |
300 |
Q |
| |
|
||||| | ||| ||| ||||||| | || ||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| | |||||||||| |
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|
| T |
24025735 |
caatttcaacca-ctgtttactcctgtggtttagattattgtaaaattaacctccgtggtcgtttggtattgaacaaatgcgacaaaccatatgcaacca |
24025833 |
T |
|
| Q |
301 |
aaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttcccttgg |
367 |
Q |
| |
|
|| | ||||| |||||||| |||||| |||||||| || |||||||||| |||||||| |||||||| |
|
|
| T |
24025834 |
aagatatcaccgccaaactacagaaagtatggaaaatcaaaggaccatggcatatgctatcccttgg |
24025900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24031965 - 24032169
Alignment:
| Q |
1 |
tcctccttccacccctgcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtg |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||| || ||||||||| || ||| || ||||||||||||| | |||| || |||||| ||| ||||||| |||| |
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|
| T |
24031965 |
tcctccttccacccctgctgcgattccacccagcaatagtattgcggctgcaactgtcccgacacacaatgtttcttctgctcagatggctgcacctgtg |
24032064 |
T |
|
| Q |
101 |
cagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatat |
200 |
Q |
| |
|
||| ||||||||||||| |||| || | |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||| |
|
|
| T |
24032065 |
cagactgcaaaaccctctttcgcaccggcgttacgtggcactccgtcaactaatgatcctatctcgttgccctctatccgtggagaaacgctagccatat |
24032164 |
T |
|
| Q |
201 |
caatt |
205 |
Q |
| |
|
|||| |
|
|
| T |
24032165 |
taatt |
24032169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 364
Target Start/End: Original strand, 5221 - 5496
Alignment:
| Q |
88 |
tgctgcacttgtgcagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaa |
187 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| || | || | | ||||||| ||||||| || ||||||||||| | ||||||| |||| ||||||| |
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|
| T |
5221 |
tgctgcacctgtgcagactgcaaaaccctcatttgctcaggctctacgtggttctccgtccactactgatcctctcccgctgccctcgatccttggagaa |
5320 |
T |
|
| Q |
188 |
acgctatccatatcaattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaa |
287 |
Q |
| |
|
|||||| || || | ||| | ||| ||||||||| | || | |||| ||||||||||| || | ||||||| |||| || | |||||| ||||| |
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|
| T |
5321 |
acgctagccgtagctatttccacca-ctgcttactttcgaggtgtcgattattgtaaaattaatcttcgtggtcgtctggttttgagcaaaggtgacaag |
5419 |
T |
|
| Q |
288 |
acctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccct |
364 |
Q |
| |
|
| |||||||||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
5420 |
ccgtatgcaaccaaagatatcaccgccaaactccagaagttatggaaagtcaaaggaccatggcatatgctgtccct |
5496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 364
Target Start/End: Original strand, 7843 - 8118
Alignment:
| Q |
88 |
tgctgcacttgtgcagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaa |
187 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| || | || | | ||||||| ||||||| || ||||||||||| | ||||||| |||| ||||||| |
|
|
| T |
7843 |
tgctgcacctgtgcagactgcaaaaccctcatttgctcaggctctacgtggttctccgtccactactgatcctctcccgctgccctcgatccttggagaa |
7942 |
T |
|
| Q |
188 |
acgctatccatatcaattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaa |
287 |
Q |
| |
|
|||||| || || | ||| | ||| ||||||||| | || | |||| ||||||||||| || | ||||||| |||| || | |||||| ||||| |
|
|
| T |
7943 |
acgctagccgtagctatttccacca-ctgcttactttcgaggtgtcgattattgtaaaattaatcttcgtggtcgtctggttttgagcaaaggtgacaag |
8041 |
T |
|
| Q |
288 |
acctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccct |
364 |
Q |
| |
|
| |||||||||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
8042 |
ccgtatgcaaccaaagatatcaccgccaaactccagaagttatggaaagtcaaaggaccatggcatatgctgtccct |
8118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 369
Target Start/End: Original strand, 24055636 - 24055744
Alignment:
| Q |
261 |
cgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgcttt |
360 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||| | |||||||||||| | |||||| ||||||||||| | || || || |||||||| | |
|
|
| T |
24055636 |
cgtttggtattaaacaaaggagacaaaccatatgcaaccaaggatatcactgccaaattacagaaaatatggaaagtcaaggggccctggcatatgctct |
24055735 |
T |
|
| Q |
361 |
cccttggcc |
369 |
Q |
| |
|
| ||||||| |
|
|
| T |
24055736 |
ctcttggcc |
24055744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0696 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0696
Description:
Target: scaffold0696; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 4566 - 4446
Alignment:
| Q |
214 |
ctgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgc |
313 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||||||||||| |||||||| |||| | |||||||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
4566 |
ctgcttactcccgagggttagacttctgcaaaattaaccttcatggtcgactggttctgaacaaaggagacaaaccctatgtgtccaaagacatcactgc |
4467 |
T |
|
| Q |
314 |
caaacttcagaaattatggaa |
334 |
Q |
| |
|
||| | ||||| |||||||| |
|
|
| T |
4466 |
caagttacagaagttatggaa |
4446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 349
Target Start/End: Complemental strand, 22393302 - 22393166
Alignment:
| Q |
213 |
actgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactg |
312 |
Q |
| |
|
|||||||||||| | ||||| |||| ||||||| |||||| | ||||| |||||| | |||||||| |||||| |||||||||||||| | ||||| | |
|
|
| T |
22393302 |
actgcttactcccgagggttggattactgtaaagctaaccttcgaggtcgattggtactgaacaaaggggacaaaccctatgcaaccaaagatatcaccg |
22393203 |
T |
|
| Q |
313 |
ccaaacttcagaaattatggaaagtctaaggaccatg |
349 |
Q |
| |
|
||||| | || ||||||||||| | |||||||||| |
|
|
| T |
22393202 |
ccaaattacatcaattatggaaaaccaaaggaccatg |
22393166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 8687261 - 8687141
Alignment:
| Q |
214 |
ctgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgc |
313 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||||||||||| |||||||| |||| | |||||||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
8687261 |
ctgcttactcccgagggttagacttctgcaaaattaaccttcatggtcgactggttctgaacaaaggagacaaaccctatgtgtccaaagacatcactgc |
8687162 |
T |
|
| Q |
314 |
caaacttcagaaattatggaa |
334 |
Q |
| |
|
||| | ||||| |||||||| |
|
|
| T |
8687161 |
caagttacagaagttatggaa |
8687141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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