View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16310_high_4 (Length: 338)
Name: NF16310_high_4
Description: NF16310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16310_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 40747715 - 40747406
Alignment:
| Q |
19 |
aatccgatatctatctattctttgatgaaatgtcagtcaatcttaatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40747715 |
aatccgatatctatctattctttgatgaaatgtcggtcaatcttaatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgatt |
40747616 |
T |
|
| Q |
119 |
tattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaa---ttccttgtccctt |
215 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| | |
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| T |
40747615 |
tattgttacaaaacaatttcatagagccttcacattatatcatcaaattttctgtcatttttttcatccataatagttcacaaatatttccttgtcccat |
40747516 |
T |
|
| Q |
216 |
agctctaaattctgctttagccctagatcgacctattacacttagcttcctactccactaagcaacaattttttcacacaagaaggtacaatatcctgaa |
315 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40747515 |
agctctaaattctactttagccctagatcgacctattacactttgcttcctactccactaagcaacaattttttcacacaagaaggtacaatatcctaaa |
40747416 |
T |
|
| Q |
316 |
gtaaatcctt |
325 |
Q |
| |
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|||||||||| |
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| T |
40747415 |
gtaaatcctt |
40747406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 27471760 - 27471593
Alignment:
| Q |
37 |
tctttgatgaaatgtcagtcaatcttaatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatt |
136 |
Q |
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|||||||||||||| | |||||||| |||| |||||||| | |||| |||| |||||| | ||||||| |||| | || || | ||||||||| || | |
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| T |
27471760 |
tctttgatgaaatgccggtcaatctcaatgtgttttgtcctttcattctgaacaagattatgtgcaatattaatggatgatttgtagtcacaaaacaact |
27471661 |
T |
|
| Q |
137 |
tcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaatt |
204 |
Q |
| |
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|||||| ||| ||||||| |||| ||||||||| || |||| |||||| | ||||||||| ||||| |
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| T |
27471660 |
tcatagggccatcacattctatcttcaaatcttatgagacttgtttcattaacaatagttcataaatt |
27471593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 12543323 - 12543427
Alignment:
| Q |
63 |
aatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatc |
162 |
Q |
| |
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|||| |||||||||||||||| |||| |||| | |||||||||||| |||||||||||||||| || ||||||||| ||||||||||| || | || |
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| T |
12543323 |
aatgtgttttgtcatgtcatgctgaag--gattatgtgcaatactaatggccgaattattgtcac--aataatttcataaggccttcacattgtaacttc |
12543418 |
T |
|
| Q |
163 |
aaatcttct |
171 |
Q |
| |
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||||||||| |
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| T |
12543419 |
aaatcttct |
12543427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 27906260 - 27906340
Alignment:
| Q |
118 |
ttattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttca |
198 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| |||| ||||||||||| ||| ||||||||| ||||||||| |
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| T |
27906260 |
ttattgtcaaaaaacaacttcatagagccttcacatcgtatcttcaaatcttctagtactagtttcatccacaatagttca |
27906340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 32834781 - 32834842
Alignment:
| Q |
147 |
ttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaattcctt |
208 |
Q |
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||||||||||||| | |||| |||| ||||| ||||||||| ||||||||||| ||||||| |
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|
| T |
32834781 |
ttcacattatatcttaaaatattctagcacttatttcatccaaaatagttcacacattcctt |
32834842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 7707743 - 7707665
Alignment:
| Q |
63 |
aatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcata |
141 |
Q |
| |
|
|||| |||||||| ||||||| |||| |||||| || ||||||||||| ||||| |||||| ||||||| || |||||| |
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| T |
7707743 |
aatgtgttttgtcttgtcatgctgaacaagattttaagcaatactaatggccgatttattgccacaaaacaacttcata |
7707665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 27913878 - 27913966
Alignment:
| Q |
36 |
ttctttgatgaaatgtcagtcaatcttaatgagtt--ttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattatt |
122 |
Q |
| |
|
|||||||||||||||| || ||||| |||| ||| ||||||||||| |||||| |||||| | |||||||||||||| ||| ||||| |
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| T |
27913878 |
ttctttgatgaaatgttggtaaatctcaatgtgttaattgtcatgtcacgttgaacaagattatctgcaatactaatagtcgatttatt |
27913966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 29402641 - 29402537
Alignment:
| Q |
179 |
ttttcatccataatagttcacaaattccttgtcccttagctctaaattctgctttagccctagatcgacctattacacttagcttcctactccactaagc |
278 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || | ||||||||||||| | | || |||||| ||| ||||||| ||||| |||||| | |||| |
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| T |
29402641 |
ttttcgtccataatagctcacaaattccttgtgccatttctctaaattctgcctcaatgcttgatcgaactactacactttgcttcttactcctccaagc |
29402542 |
T |
|
| Q |
279 |
aacaa |
283 |
Q |
| |
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||||| |
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|
| T |
29402541 |
aacaa |
29402537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 30996763 - 30996594
Alignment:
| Q |
37 |
tctttgatgaaatgtcagtcaatcttaatgagttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatt |
136 |
Q |
| |
|
||||||||||||||| |||||||| ||| || | |||||||||| || || | |||| | ||||||| |||| | | |||| |||||| || || | |
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| T |
30996763 |
tctttgatgaaatgttggtcaatctcaatttgtctagtcatgtcatattaaacatgattatgtgcaatattaatggta-atttatcgtcacacaacaact |
30996665 |
T |
|
| Q |
137 |
tcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaattcct |
207 |
Q |
| |
|
||||| ||||||| || |||| ||||||||||| || || ||||||| |||||||||||||||||||| |
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|
| T |
30996664 |
ccatagggccttcatgttgtatcttcaaatcttctagcatttgtttcatctataatagttcacaaattcct |
30996594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 14302634 - 14302530
Alignment:
| Q |
100 |
gcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcac |
199 |
Q |
| |
|
||||||||||| | ||| |||||||||||||| || ||||| | ||||| ||||| |||| | |||| |||| | || | ||||||| | | |||||||| |
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| T |
14302634 |
gcaatactaatggtcgatttattgtcacaaaacaacttcattgcgcctttacattgtatctttaaattttctatgacatgtttcatcgacattagttcac |
14302535 |
T |
|
| Q |
200 |
aaatt |
204 |
Q |
| |
|
||||| |
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|
| T |
14302534 |
aaatt |
14302530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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