View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16310_low_1 (Length: 425)
Name: NF16310_low_1
Description: NF16310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16310_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 24890636 - 24891024
Alignment:
| Q |
19 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaaactagcttcaattaattctgttgctaaacatgaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24890636 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaagctagcttcaattaattctgttgctgaacatgaag |
24890735 |
T |
|
| Q |
119 |
atgagcaacttgtgttgttttttgttactattgatgctaaaaactcgacagcacccgccgattcgatacaccgtcgatttgactcactctcggatgcaat |
218 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
24890736 |
atgaacaacttgtgttgttttgtgttactattgatgctaaaaactcgacagcgcctgccgattcgatacaccgtctatttgtttcgctctcggatgcaat |
24890835 |
T |
|
| Q |
219 |
tgttttgagcttttttagggtttgaataagcaaatgaggtgaatctgaagaatcagaagcttctttgaggagtttttctacaagggtttttgttgttgga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
24890836 |
tgttttgagcttttttagggtttgaataagcaaatgaggt---------gaatcagaagcttctttgaggagtttttctataaggttttttgttgttgga |
24890926 |
T |
|
| Q |
319 |
ggttttggtgttggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataat |
416 |
Q |
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| T |
24890927 |
ggttttggtgttggaatcctttcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataat |
24891024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 24906790 - 24906402
Alignment:
| Q |
19 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaaactagcttcaattaattctgttgctaaacatgaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24906790 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaagctagcttcaattaattctgttgctgaacatgaag |
24906691 |
T |
|
| Q |
119 |
atgagcaacttgtgttgttttttgttactattgatgctaaaaactcgacagcacccgccgattcgatacaccgtcgatttgactcactctcggatgcaat |
218 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || ||||| || ||||| |
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| T |
24906690 |
atgaacaacttgtgttgttttgtgttactattgatgctaaaaactcgacagcgccagccgattcgatacaccgtctatttgtttcgctctcagaggcaat |
24906591 |
T |
|
| Q |
219 |
tgttttgagcttttttagggtttgaataagcaaatgaggtgaatctgaagaatcagaagcttctttgaggagtttttctacaagggtttttgttgttgga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
24906590 |
tgttttgagcttttttagggtttgaataagcaaatgaggtg---------aatcagaagcttctttgaggagtttttctataaggatttttgttgttgga |
24906500 |
T |
|
| Q |
319 |
ggttttggtgttggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataat |
416 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906499 |
ggttttggtgttggaatcctttcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataat |
24906402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 24899331 - 24898943
Alignment:
| Q |
19 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaaactagcttcaattaattctgttgctaaacatgaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24899331 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaagctagcttcaattaattctgttgctgaacatgaag |
24899232 |
T |
|
| Q |
119 |
atgagcaacttgtgttgttttttgttactattgatgctaaaaactcgacagcacccgccgattcgatacaccgtcgatttgactcactctcggatgcaat |
218 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || ||||| || ||||| |
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| T |
24899231 |
atgaacaacttgtgttgttttgtgttactattgatgctaaaaactcgacagcgccagccgattcgatacaccgtctatttgtttcgctctcagaagcaat |
24899132 |
T |
|
| Q |
219 |
tgttttgagcttttttagggtttgaataagcaaatgaggtgaatctgaagaatcagaagcttctttgaggagtttttctacaagggtttttgttgttgga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
24899131 |
tgttttgagcttttttagggtttgaataagcaaatgaggtg---------aatcagaagcttctttgaggagtttttctataaggatttttgttgttgga |
24899041 |
T |
|
| Q |
319 |
ggttttggtgttggaatcctatcaattccataagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataat |
416 |
Q |
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|||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899040 |
ggttttggagttggaatcctttcaattccaaaagaagaattcatggtgcaccatgcttggatgagtctacgaagagtgtggtttggagtgagaataat |
24898943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 5285007 - 5284950
Alignment:
| Q |
19 |
atagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatc |
77 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||| |
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| T |
5285007 |
atagcttcatcctctgcacctattttgaactcaaaagcaaaa-cttcaacgtcatcatc |
5284950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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