View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16310_low_2 (Length: 410)
Name: NF16310_low_2
Description: NF16310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16310_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 7259952 - 7259572
Alignment:
| Q |
11 |
aagcaaaggtgaga--aactatggaagaattgtttgttgattatcttaattaaatttcctttcaaaacttaagacttcaagttatgtatgctatgacagt |
108 |
Q |
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| T |
7259952 |
aagcaaaggtgagagaaactatggaagaattgtttgttgattatcttaatgaaatttcctttcaaaacttaagacttcaagttatgtatgctatgacagt |
7259853 |
T |
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| Q |
109 |
tagaaagcattgtgaagttgtaccctggtgttagtcatggatggacattgaggtacaatgttgaagatgaagttgcagttaagaatgcagaagaggctca |
208 |
Q |
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| T |
7259852 |
tagaaagcattgtgaagttgtaccctggtgttagtcatggatggacattgagatacagtgttgaagatgaagttgcagttaagaatgcagaagaggctca |
7259753 |
T |
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| Q |
209 |
tcaggacatgttgaattggtttatcaagtatgtcaagtgaatgtcaaaaatgatacatgtaattgaaattaagtgagaaaaaatattattgttgtttact |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7259752 |
tcaggacatgttgaattggtttatcaagtatgtcaagtgaatgtcaaaaatgatacatgtaattgaaattaagtgagtaaaaatattattgttgtttact |
7259653 |
T |
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| Q |
309 |
tgtggttaataagagaatacaatgcgaaaaagtgttacatttaggtgtactatttgtttatagtaataatttattagtaaactt |
392 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7259652 |
tgtggttaataagagaatacaatgtgaaaaagtgttacatttaggtgtactatttgtttatag---taatttattagtaaactt |
7259572 |
T |
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