View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16310_low_5 (Length: 250)

Name: NF16310_low_5
Description: NF16310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16310_low_5
NF16310_low_5
[»] chr5 (9 HSPs)
chr5 (14-231)||(37162694-37162911)
chr5 (14-231)||(38745719-38745936)
chr5 (81-231)||(37129954-37130104)
chr5 (25-210)||(37137131-37137319)
chr5 (25-210)||(35144240-35144425)
chr5 (14-141)||(37144405-37144529)
chr5 (14-135)||(37130125-37130246)
chr5 (17-125)||(37137291-37137399)
chr5 (81-223)||(37144260-37144393)
[»] chr4 (2 HSPs)
chr4 (14-231)||(3024863-3025080)
chr4 (29-231)||(29723523-29723728)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 37162911 - 37162694
Alignment:
Q  14 agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162911 agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat 37162812  T
Q  114 ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162811 ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc 37162712  T
Q  214 ataaaatgaactttggag 231  Q
    ||||||||||||||||||    
T  37162711 ataaaatgaactttggag 37162694  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 38745936 - 38745719
Alignment:
Q  14 agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat 113  Q
    |||||||| | ||||||||| ||||| ||||||||  ||  | ||| |||||| ||||||| |||  ||||||||||||||| |||||||||||| ||||    
T  38745936 agatgaagttcctgcaaatttgaaagacttccaagtggacgaagaacggttcccacaagatcatttgaactaagatcaaggtactgcaaatgagagagat 38745837  T
Q  114 ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc 213  Q
    ||||||||| |||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  38745836 ttccaagttaatgagggattgtaccctcaaggccattgtctgaaagatcaagatattgcaagtgcgaaagacgagcaagatcctttggaattcttccccc 38745737  T
Q  214 ataaaatgaactttggag 231  Q
    || |||||||| ||||||    
T  38745736 atcaaatgaaccttggag 38745719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 37130104 - 37129954
Alignment:
Q  81 aactaagatcaaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcga 180  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||| |    
T  37130104 aactaagatcaagatgctgcaaatgagagagatttccaaattgatgagggattgtacccttgaggccattccatgaaagatcaagatattgcaagtgcaa 37130005  T
Q  181 aagacgagaaagatcatttggaattcttcctccataaaatgaactttggag 231  Q
    |||||| | ||||||||||||||||||||| |||  |||||||||||||||    
T  37130004 aagacgtgcaagatcatttggaattcttccgccacgaaatgaactttggag 37129954  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 37137319 - 37137131
Alignment:
Q  25 ctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaag---attattccaactaagatcaaggtgctgcaaatgagacagatttccaagt 121  Q
    ||||||||  |||||  |||||||||||||||||||  ||||||||||   || |||  ||||||||||||| |||||||||||||| |||||||| |||    
T  37137319 ctgcaaatgtgaaagatttccaagctgataaggaatttttccaacaaggccataatttgaactaagatcaagatgctgcaaatgagagagatttccgagt 37137220  T
Q  122 tgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcc 210  Q
    ||| || |||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  37137219 tgaggacggattgtaccctcgaggccattccttgaaagatcaagatattgcaagtgcgacagatgagcaagatcatttggaattcttcc 37137131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 35144240 - 35144425
Alignment:
Q  25 ctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagatttccaagttga 124  Q
    |||||||||  |||||||||||||||||| |||||||| ||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||    
T  35144240 ctgcaaatttaaaaggcttccaagctgatgaggaatggctccgacaagatgattcgaactgagatcaagatgctgcaaatgagagagatttccaagttga 35144339  T
Q  125 tgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcc 210  Q
    |||||||||  |||||| || || ||   | |||||||||||||||||||||| |||||||  | |||||||||||||||||||||    
T  35144340 tgagggatttcaccctccagtctgttaaattaaagatcaagatattgcaagtgtgaaagacaggcaagatcatttggaattcttcc 35144425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 37144529 - 37144405
Alignment:
Q  14 agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat 113  Q
    |||||||||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||  ||||||||||| ||||    
T  37144529 agatgaagctcctgtaaatttgaaaggcttccaagttgatgaggaatggttccaacaagatcattcccactaagatcaaggtattgcaaatgagagagat 37144430  T
Q  114 ttccaagttgatgagggattgtaccctc 141  Q
    ||||||   |||||||||||||||||||    
T  37144429 ttccaa---gatgagggattgtaccctc 37144405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 37130246 - 37130125
Alignment:
Q  14 agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat 113  Q
    |||||||| | ||| ||||| |||||||||||||| |||| |||||||||||||||||||  |||  |||||||||||||||  ||||||||||| ||||    
T  37130246 agatgaagttcctgtaaatttgaaaggcttccaagttgatgaggaatggttccaacaagaaaatttgaactaagatcaaggtaatgcaaatgagagagat 37130147  T
Q  114 ttccaagttgatgagggattgt 135  Q
    ||||||||||||||||||||||    
T  37130146 ttccaagttgatgagggattgt 37130125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 37137399 - 37137291
Alignment:
Q  17 tgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagatttc 116  Q
    ||||||| ||| ||||  |||||||||||||| |||| |||||| ||||||||||||  |||  ||||||||||||||| ||||||||| || |||||||    
T  37137399 tgaagctcctgtaaatctgaaaggcttccaagttgatgaggaatcgttccaacaagaacatttgaactaagatcaaggtactgcaaatgtgaaagatttc 37137300  T
Q  117 caagttgat 125  Q
    |||| ||||    
T  37137299 caagctgat 37137291  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 37144393 - 37144260
Alignment:
Q  81 aactaagatcaaggtgctgcaaat-gagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcg 179  Q
    ||||||||||||||| |||||||  || | |||||| ||||||||||||||||||||| || ||||          ||| |||||||||||| || |||     
T  37144393 aactaagatcaaggtactgcaaaacgaaagagattttcaagttgatgagggattgtacgcttgagg----------aaatatcaagatattgtaaatgca 37144304  T
Q  180 aaagacgagaaagatcatttggaattcttcctccataaaatgaa 223  Q
    ||||||||| ||||| |||||||||||||||||||| |||||||    
T  37144303 aaagacgagcaagattatttggaattcttcctccatcaaatgaa 37144260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 3024863 - 3025080
Alignment:
Q  14 agatgaagctgctgcaaattcgaaaggcttccaagctgataaggaatggttccaacaagattattccaactaagatcaaggtgctgcaaatgagacagat 113  Q
    |||||||| | |||||| || ||||| ||||||||  ||  | ||| ||||||  |||||| |||  ||||||||||||||| |||||||||||| ||||    
T  3024863 agatgaagttcctgcaattttgaaagacttccaagtggacgaagaacggttcccgcaagatcatttgaactaagatcaaggtactgcaaatgagagagat 3024962  T
Q  114 ttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctcc 213  Q
    |||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  3024963 ttccaagttgatgagggattgtaccctcaaggccattgtctgaaagatcaagatattgcaagtgcgaaagacgagcaagatcctttggaattcttccccc 3025062  T
Q  214 ataaaatgaactttggag 231  Q
    || |||||||| ||||||    
T  3025063 atcaaatgaaccttggag 3025080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 29723523 - 29723728
Alignment:
Q  29 aaattcgaaaggcttccaagctgataaggaatggttccaacaaga---ttattccaactaagatcaaggtgctgcaaatgagacagatttccaagttgat 125  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||   |||||  ||||||||||||||| |  ||||||||| | ||||||||||||||    
T  29723523 aaatttgaaaggcttccaagttgatgaggaatggttccaacaagaacattattataactaagatcaaggtacaacaaatgagagaaatttccaagttgat 29723622  T
Q  126 gagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctccataaaatgaact 225  Q
     |||||||||| ||||||| | ||||| ||||||||||||||||||||| || ||||| |||  ||||||||||||| |||||||  ||| ||||||||     
T  29723623 aagggattgtaacctcgagacgattctctgaaagatcaagatattgcaactgtgaaaggcgaacaagatcatttggatttcttccgtcatcaaatgaacc 29723722  T
Q  226 ttggag 231  Q
    ||||||    
T  29723723 ttggag 29723728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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