View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16311_low_1 (Length: 486)
Name: NF16311_low_1
Description: NF16311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16311_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 360971 - 361438
Alignment:
| Q |
19 |
cgagattccttttaaagtattgaagttaggaatttgtgaaaggagtaactgtatacaaacaaagaagcaaatataatatgtttgtctaatttcatcaaac |
118 |
Q |
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| T |
360971 |
cgagattccttttaaagtattgaagttaggaatttgtgaaaggagtaactgtatacaaacaaagaagcagatataatatgtttgtctaatttcatcaaac |
361070 |
T |
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| Q |
119 |
attggcattattggagtcattatttcacagaacttcttaagtgattttccaccagtgactgaatacacaatggttgaagcaacctgaacaatcaattgtt |
218 |
Q |
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| T |
361071 |
attggcattattggagtcattatttcacagaacttcttaagtgattttccaccagtgactgaatacacaatggttgaagcaacctgaacaatcaattgtt |
361170 |
T |
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| Q |
219 |
gtatcattataacccagaatccaactttgccttgaaatacatgttctcctaaatcaaagtatctatcaaatctcttccctggaaccaattcgtgcatttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
361171 |
gtatcattataacccagaatccaactttgccttgaaatacatgttctcctaaatcaaagtatctatcaaatctcttccctggaaccaattcatgcatttg |
361270 |
T |
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| Q |
319 |
cactagttgccatagtgagtaaaatgtcacaagccatgacactaaaatcactgaaatccctggaatcctttacaaatacaaatatatagatttaaattag |
418 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
361271 |
cactagttgccacagtgagtaaaatgtcacaagccatgacactaaaatcactgaaatccctggaatcctttacaaatacaaatatatagatttaaattag |
361370 |
T |
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| Q |
419 |
catatattgtaaccgaaaaactacatgtgaaaatttcgtgtcattattttcgaacactagacatatct |
486 |
Q |
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| T |
361371 |
catatattgtaaccgaaaaactacatgtgaaaatttcgtgtcattattttccaacactagacatatct |
361438 |
T |
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