View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16311_low_10 (Length: 211)
Name: NF16311_low_10
Description: NF16311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16311_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 27521322 - 27521516
Alignment:
| Q |
9 |
aggagcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521322 |
aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
27521421 |
T |
|
| Q |
109 |
tgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
203 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521422 |
tgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
27521516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 27462108 - 27461919
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27462108 |
cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27462009 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
203 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27462008 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgt |
27461919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 27482247 - 27482058
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27482247 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27482148 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
203 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
27482147 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgt |
27482058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 18986208 - 18986019
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18986208 |
cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
18986109 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
203 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
18986108 |
cttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 1758256 - 1758067
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1758256 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
1758157 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
1758156 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgt |
1758067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 29425404 - 29425232
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29425404 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
29425305 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
183 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29425304 |
cttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 29568361 - 29568536
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29568361 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt |
29568460 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
189 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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|
| T |
29568461 |
cttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatga |
29568536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 29168363 - 29168171
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29168363 |
cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt |
29168264 |
T |
|
| Q |
114 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgt |
203 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29168263 |
attggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 29569708 - 29569866
Alignment:
| Q |
30 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
129 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |
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|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
130 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
30 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
129 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
130 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
189 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 25518588 - 25518400
Alignment:
| Q |
18 |
gacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttg |
117 |
Q |
| |
|
|||||||| || ||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25518588 |
gacacagcagcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttg |
25518489 |
T |
|
| Q |
118 |
agtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgt |
203 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25518488 |
gatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgt |
25518400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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