View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16311_low_4 (Length: 360)
Name: NF16311_low_4
Description: NF16311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16311_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 2350459 - 2350111
Alignment:
| Q |
1 |
tgtgaaggacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcacc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2350459 |
tgtgtaggacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcacc |
2350360 |
T |
|
| Q |
101 |
ataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2350359 |
ataaaaagcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgaga |
2350260 |
T |
|
| Q |
201 |
gcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2350259 |
gcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataa |
2350160 |
T |
|
| Q |
301 |
aaggttcgagttgggacgatgattttcggagccataggatacttgtgat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2350159 |
aaggttcgagttgggacgatgattttcggagccataggatacttgtgat |
2350111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 2302881 - 2302558
Alignment:
| Q |
9 |
acccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaag |
108 |
Q |
| |
|
|||||||| || ||||||||||| |||||| | || || |||||||| ||||| ||||||||||| |||||||||| ||||||||||| ||||||||| |
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|
| T |
2302881 |
acccacttccgaatttctgagaacgatttggttttggaaggatgaagtatctcggaagcaaggttacgacggagggtacgccatgttgggccataaaaac |
2302782 |
T |
|
| Q |
109 |
cggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggtg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| || |||| |||| |||||||||||||| ||||| ||||||||||||||||| | ||||| |
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|
| T |
2302781 |
cggagctgatgttgtgttggttgctggacaacattttggaagtaggaaaagctttagggcgatcagagtagatgtctgagttttgaacgagaacatggtg |
2302682 |
T |
|
| Q |
209 |
ggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttcg |
308 |
Q |
| |
|
||| |||| |||||| |||||||||||||||||| ||| ||| | |||||||||||||||||||| ||||| ||||| ||||||| ||||||||| |
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|
| T |
2302681 |
ggccagagcatggtcatcgatgaaaatggaaggtcgagaaccgatgtggagagtgatgataggaccatgtttggcatggagagttttgagaaaaggttca |
2302582 |
T |
|
| Q |
309 |
agttgggacgatgattttcggagc |
332 |
Q |
| |
|
|||||||| |||| |||||||||| |
|
|
| T |
2302581 |
agttgggaggatggttttcggagc |
2302558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 2293263 - 2292918
Alignment:
| Q |
8 |
gacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaa |
107 |
Q |
| |
|
||||||||| || ||||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||||| |||| ||||||||||| |||||| || |
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|
| T |
2293263 |
gacccacttccgaatttctgagaacgatttgagtttggatggatgaagcatctcggaagcaaggttacgacgaagggtacgccatgttgggccataataa |
2293164 |
T |
|
| Q |
108 |
gcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggt |
207 |
Q |
| |
|
|||| | |||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||||||||| |||||||||||||||| | |||| |
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|
| T |
2293163 |
gcggtgttgatgttgtgttggttgctggacaacattttggaagtaggaagagctgtagggcgatcagagaagatggatgagttttgaacgagaacatggt |
2293064 |
T |
|
| Q |
208 |
gggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttc |
307 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||| ||| | || ||||||||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
2293063 |
gggccagagtatggtcgttaatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtttggcatggagagttttgagaaaaggttc |
2292964 |
T |
|
| Q |
308 |
gagttgggacgatgattttcggagccataggatacttgtgatgatg |
353 |
Q |
| |
|
|||||||| ||||||| ||||| || ||| ||||||||||| |
|
|
| T |
2292963 |
aagttgggagattgatttttggagcaattggaagtttgtgatgatg |
2292918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 2320583 - 2320238
Alignment:
| Q |
8 |
gacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaa |
107 |
Q |
| |
|
||||||||| || ||||||||||| |||||| | || ||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||| |
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|
| T |
2320583 |
gacccacttccgaatttctgagaacgatttggttttggatggatgaagcatctcggaagcaaggttacgacggagggtacgccatgttgggccataaaaa |
2320484 |
T |
|
| Q |
108 |
gcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| ||| || ||||||||| |||||||| ||||||||||||||||||||||||||| | |||| |
|
|
| T |
2320483 |
gcggagctgatgttgtgttggttgctggacaacattatggaagtaggaagagctacggggcgatccgagaagatggctgagttttgaacgagaacatggt |
2320384 |
T |
|
| Q |
208 |
gggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttc |
307 |
Q |
| |
|
| || |||| ||||||| |||||||||||||||||| ||| ||| | || ||||||||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
2320383 |
gagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtttggcatggagagttttgagaaaaggttc |
2320284 |
T |
|
| Q |
308 |
gagttgggacgatgattttcggagccataggatacttgtgatgatg |
353 |
Q |
| |
|
|||||||| ||||||| ||||| || ||| ||||||||||| |
|
|
| T |
2320283 |
aagttgggagattgatttttggagcaattggaagtttgtgatgatg |
2320238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 2330151 - 2329808
Alignment:
| Q |
9 |
acccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaag |
108 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||||||||||||||||||||||| || || ||||| |||||||| | ||||||||||| |||||||||| |
|
|
| T |
2330151 |
acccacttccgaatttcagagaatgatttgatcttagatggatgaagcatctcggaggcgaggttacgacggagagtacgccatgttggtccataaaaag |
2330052 |
T |
|
| Q |
109 |
cggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggtg |
208 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||| |||| |||||||| ||| |||| ||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2330051 |
cggagctgatattgtgctggttgctggacatgagtttgttagtgggaagtgctttaggacgatcagagaagacggaggagttttgaacgagagcgtggtg |
2329952 |
T |
|
| Q |
209 |
ggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttcg |
308 |
Q |
| |
|
||| |||| | |||||| |||||||||||||||||| ||| ||| || ||| ||||||||||||||| ||||| || || ||| ||| ||||||||| |
|
|
| T |
2329951 |
ggccagagcacggtcggcgatgaaaatggaaggtcgagaaccgatattaagattgatgataggaccatgtttggcatgaagagttctgagaaaaggttca |
2329852 |
T |
|
| Q |
309 |
agttgggacgatgattttcggagccataggatacttgtgatgat |
352 |
Q |
| |
|
|| |||| |||||||||| |||||| |||| ||||||||||| |
|
|
| T |
2329851 |
agctgggcgaatgattttcgaagccattggatgcttgtgatgat |
2329808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 2326436 - 2326092
Alignment:
| Q |
9 |
acccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaag |
108 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| || ||||| |||||||||| || |||||||| |||||||||| |
|
|
| T |
2326436 |
acccacttccgaatttcagagaatgatttgatcttggatggatgaagcatctcagaggcgaggttacgacggagggtacaccatgttgggccataaaaag |
2326337 |
T |
|
| Q |
109 |
cggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggtg |
208 |
Q |
| |
|
||| |||||||||||| |||||||| || |||| |||| ||||||| ||| |||| ||||| ||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
2326336 |
cggcgctgatgttgtgctggttgctagatatgagtttgtgactgggaagtgctttaggacgatcggagaagagagatgaattttgaacgagggcgtggtg |
2326237 |
T |
|
| Q |
209 |
ggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttcg |
308 |
Q |
| |
|
||| |||| | ||||||||||| |||||||||||| | | | ||| || ||| ||||||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
2326236 |
ggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttca |
2326137 |
T |
|
| Q |
309 |
agttgggacgatgattttcggagccataggatacttgtgatgatg |
353 |
Q |
| |
|
|||||||| ||||||||||||||||| | || |||||||||||| |
|
|
| T |
2326136 |
agttgggaaaatgattttcggagccattgtatgcttgtgatgatg |
2326092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 2309594 - 2309249
Alignment:
| Q |
8 |
gacccacttacggatttctgagaaagatttgatcttagatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaa |
107 |
Q |
| |
|
||||||||| | ||||||||||| ||||||| || ||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
2309594 |
gacccacttctgaatttctgagaacgatttgagtttggatggatgaagcatctcgaaagcaaggttacgacggagggtacgccatgttgggccataaaaa |
2309495 |
T |
|
| Q |
108 |
gcggagctgatgttgtgttggttgctggagatgattttggcggtgggaagagctctagggcgatcagagaagatggctgagttttgaacgagagcgtggt |
207 |
Q |
| |
|
|||| | |||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||| | |||| |
|
|
| T |
2309494 |
gcggtgttgatgttgtgttggttgctggacaacattttggaagtaggaagagctgtagggcgatcagagattatggctgagttttgaacgagaacatggt |
2309395 |
T |
|
| Q |
208 |
gggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtggagggttttgataaaaggttc |
307 |
Q |
| |
|
| || |||| ||||||| |||||||||||||||| | ||| ||| | || | ||||||||||||||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
2309394 |
gagccagagcatggtcgttgatgaaaatggaaggttgagaaccgatatggacaatgatgataggaccatgtttggcatggagagttttgagaaaaggttc |
2309295 |
T |
|
| Q |
308 |
gagttgggacgatgattttcggagccataggatacttgtgatgatg |
353 |
Q |
| |
|
|||||||| ||||||| ||||| || ||| ||||||||||| |
|
|
| T |
2309294 |
aagttgggagattgatttttggagcaattggaagtttgtgatgatg |
2309249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 41126428 - 41126345
Alignment:
| Q |
44 |
agatggatgaagcatctcagaagcaaggtttcgacggagggcacgccatgttgcaccataaaaagcggagctgatgttgtgttg |
127 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||| |||| ||||||||| || |||||| |||| | | ||||| ||||||| |
|
|
| T |
41126428 |
agatgggtgaagcatctcagcggcaaggttacgacgtagggtacgccatgtagctccataagaagcagtgttgatggtgtgttg |
41126345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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