View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16311_low_7 (Length: 315)
Name: NF16311_low_7
Description: NF16311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16311_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 13189218 - 13189514
Alignment:
| Q |
11 |
cagagatttaaaaatatatcaacttactcattcataaacaacataa----------tataaaaattaacatatagtaatgatgtcaaatgaatctataga |
100 |
Q |
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| T |
13189218 |
cagagatttaaaaatatatcaacttactcattcataaacaacatatcatatgaatctataaaaattaacatatagtaatgatgtcaaatgaatctataga |
13189317 |
T |
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| Q |
101 |
atttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatcacctatgttttaccgcaactgagctgttcgactggaggcgaac |
200 |
Q |
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| T |
13189318 |
atttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatcacctatgttttaccgcaactgagctgttcgactggaggcgaac |
13189417 |
T |
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| Q |
201 |
atcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaaatattgacatcattaaactaaacaaagtttggatcaatagct |
297 |
Q |
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| T |
13189418 |
atcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaaatattgacatcattaaactaaacaaagtttggatcaatagct |
13189514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 85 - 297
Target Start/End: Original strand, 13180980 - 13181192
Alignment:
| Q |
85 |
caaatgaatctatagaatttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatca--cctatgttttaccgcaactgagct |
182 |
Q |
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| T |
13180980 |
caaatggatctatcaaatttaataggagaaagaattcat-tcaaattgagtaaaacatatatcgtt-caaatcaaaccaatcttttaccgccgttgagct |
13181077 |
T |
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| Q |
183 |
gttcgactggaggcgaacatcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaaatattgacatcattaaactaaacaaag |
282 |
Q |
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| T |
13181078 |
gctcaactggacgcgaacatcaagtctcgcagctgtttgttgaaccttacaatatgtgttccaggataaagaaatatcgacatcattaaactaagcaaaa |
13181177 |
T |
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| Q |
283 |
tttggatcaatagct |
297 |
Q |
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| T |
13181178 |
ttttgattaatagct |
13181192 |
T |
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