View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16313_high_1 (Length: 567)
Name: NF16313_high_1
Description: NF16313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16313_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 32460178 - 32460731
Alignment:
| Q |
1 |
actcaatggatcccaaaaccggcttcaattccatttccaaaaccttccacagtctcagacccccactcaaccttcctccaccacacgccaatatctccgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32460178 |
actcaatggatcccaaaaccggcttcaattccatttccaaaaccttccacagtctcagacccccactcaaccttcctccaccacacgccaatatctccgc |
32460277 |
T |
|
| Q |
101 |
cgcaacatacaccttctccctccaccactccgacttcaactccgactcaaacactctcctcgtcgactcaacaacatctcacaaactctcttactccacc |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32460278 |
cgcaacatacaccttctccctccaccactctgacttcaactccgactcaaacactctcctcatcgactcaacaacatctcacaaactctcttactccacc |
32460377 |
T |
|
| Q |
201 |
ttcatccaacgctacaaaaccctcgcgaaaaacctcactctccgcggactcaccaaacaccacaccgcattcattctttccccaaacctcgttcaggttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32460378 |
ttcatccaacgctacaaaaccctcgcgaaaaacctcactctccgcggactcaccaaacaccacacctcattcattctttccccaaacctcgttcaggttc |
32460477 |
T |
|
| Q |
301 |
caatcctctacttcgcattgctctccattggcgtcgttgtttcaccaacaaacccaatttccactccctcagaaatttctcatctcgttaacctctctaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32460478 |
caatcctctacttcgcattgctctccattggcgtcgttgtttcaccaacaaacccaatctccactccctcagaaatttctcatctcgttaacctctctaa |
32460577 |
T |
|
| Q |
401 |
accggttatcgcttttacgacctcgtttttatctcacaaacttccga---aactcgctttaggaacgattctcatcgactcgcccgagttcgaatccctc |
497 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32460578 |
accggttatcgcttttacgacgtcgtttttatctcacaaacttccgaaacaactcgctttaggaacgattctcatcgactcgcccgagttcgaatccctc |
32460677 |
T |
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| Q |
498 |
accaccgaaacagatgttacttcgacggtgtcgccgccggaggtcagtcaatcc |
551 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32460678 |
accaccgaaacagatgttagttcgacggtgtcgccgccggaggtcagtcaatcc |
32460731 |
T |
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