View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16313_low_4 (Length: 251)
Name: NF16313_low_4
Description: NF16313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16313_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 27183997 - 27184211
Alignment:
| Q |
17 |
gaagaacggaaatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaaccgaggtgattgaggagatcggttttaaaggtgcaagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27183997 |
gaagaacggaaatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaaccgaggtgattgaggagatcgattttaaaggtgcaagt |
27184096 |
T |
|
| Q |
117 |
catgtatgtcaaattgtactctacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtaaaagcttaaagttttcaacctga |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27184097 |
cgcgtatgtcaaattgtactctacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtaacagcttaaagttttcaacctga |
27184196 |
T |
|
| Q |
217 |
aggtttatgagtcta |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27184197 |
aggtttatgagtcta |
27184211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 27230254 - 27230038
Alignment:
| Q |
17 |
gaagaacggaaatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaaccgaggtgattgaggagatcggttttaaaggtgcaagt |
116 |
Q |
| |
|
|||||| |||||||||||| ||| || | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | | || | |
|
|
| T |
27230254 |
gaagaaaggaaatatattcttaagtatagagaatggtaaaatagcttgctttgatttaacaaccaaggtgattgaggagatcggttttaaaagagaaatt |
27230155 |
T |
|
| Q |
117 |
catgtatgtcaaattgtactctacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtaaaagcttaaagttttcaacctga |
216 |
Q |
| |
|
||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
27230154 |
catatttgtcaaatagtacattacaagaaaaaccttggtccaattggaggaataaacagttaattgcttttgtagtcaaagcttaaagttttcaaccagg |
27230055 |
T |
|
| Q |
217 |
aggtttatgagtctagt |
233 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
27230054 |
agatttatgagtctagt |
27230038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 13472878 - 13472793
Alignment:
| Q |
27 |
aatatattcataaataaaaagaatggtaaaatagcttgttttgatttaacaacc--ga-ggtgattgaggagatcggttttaaagg |
109 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||| ||| || | ||||||||||||||| | ||||||| |
|
|
| T |
13472878 |
aatatattcttcaataaaaaagatggtaaaatagcttgttttgatttaactaccatgatgatgattgaggagatcgatgttaaagg |
13472793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 19163163 - 19163113
Alignment:
| Q |
58 |
tagcttgttttgatttaacaaccgaggtgattgaggagatcggttttaaag |
108 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||| ||| |||||| |
|
|
| T |
19163163 |
tagcttgttttgatttaactaccgggatgattgaggagattggtgttaaag |
19163113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University