View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16314_high_1 (Length: 351)

Name: NF16314_high_1
Description: NF16314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16314_high_1
NF16314_high_1
[»] chr4 (5 HSPs)
chr4 (13-145)||(44765103-44765235)
chr4 (265-347)||(28362428-28362510)
chr4 (16-93)||(28360263-28360339)
chr4 (210-267)||(28361311-28361373)
chr4 (95-139)||(28360330-28360375)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 44765103 - 44765235
Alignment:
Q  13 aatatcttaatactttcattttcgaaggaagtccacactcaaactatttgttatacactattgagtaaacgatcaaattgacatcaaattgatgcatgtc 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44765103 aatatcttagtactttcattttcgaaggaagtccacactcaaactatttgttatacactattgagtaaacgatcaaattgacatcaaattgatgcatgtc 44765202  T
Q  113 tttataagtcattataaatttgtctataactat 145  Q
    |||||||||||||||||||||||||||||||||    
T  44765203 tttataagtcattataaatttgtctataactat 44765235  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 347
Target Start/End: Original strand, 28362428 - 28362510
Alignment:
Q  265 atttgagagtaattcaccaattccctggcttactactatttgtttcattattcactttccatccgaaactacacgtgtattgc 347  Q
    |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28362428 atttgagagtaattcaccaattcccctgtttgctactatttgtttcattattcactttccatccgaaactacacgtgtattgc 28362510  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 28360263 - 28360339
Alignment:
Q  16 atcttaatactttcattttcgaaggaagtccacactcaaactatttgttatacactattgagtaaacgatcaaattga 93  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28360263 atcttagtactttcatttta-aaggaagtccacactcaaactatttattatacactattgagtaaacgatcaaattga 28360339  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 28361311 - 28361373
Alignment:
Q  210 gttacataacttggatcta-----attattgtttgtcaaacacaaagatgagtttaaaatatt 267  Q
    |||||||||||||||||||     |||||| |||||||||||||||||| |||||||||||||    
T  28361311 gttacataacttggatctaccagaattattttttgtcaaacacaaagatcagtttaaaatatt 28361373  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 28360330 - 28360375
Alignment:
Q  95 atcaaattgatgcatgtctttataagtcattat-aaatttgtctat 139  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||    
T  28360330 atcaaattgatgcatgtctttataaatcattatcaaatttatctat 28360375  T

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