View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16315_high_5 (Length: 208)
Name: NF16315_high_5
Description: NF16315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16315_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 6883348 - 6883176
Alignment:
| Q |
16 |
cacagacagttcgaacctctcaagctacatgtacccggtaccgtacccagtactcgttgcgtattgtgggcacnnnnnnnnctattatattgtatattct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6883348 |
cacagacagttcgaacctctcaagctacatgtacccggtac------------tcgttgcgtattgtgggcacttttttt-ctattatattgtatattct |
6883262 |
T |
|
| Q |
116 |
ttaccaaattttcactctgtaaacagcatttatcaacctcctgttatgtaaataccctctttctattctaatcttcttgatgatgt |
201 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6883261 |
ttaccaaattttcactatgtaaacagcatttatcaacctcctgttatgtaaataccctctttctattctaatcttcttgattatgt |
6883176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University