View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16315_low_1 (Length: 591)
Name: NF16315_low_1
Description: NF16315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16315_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 34225518 - 34225264
Alignment:
| Q |
21 |
attatcacaacccacttctccgaccatcgccaatgaacgatgcccattactctcatcattgccaattaacaaccacttcgactaccgtcgtcaactacca |
120 |
Q |
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| T |
34225518 |
attatcacaacccacttctccgaccatcgccaatgaacgatgcccattactctcatcattgccaattaacaaccacttcgactaccgtcgtcaactacca |
34225419 |
T |
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| Q |
121 |
accaccactctaaccacctctgaatgcaaattttagaccaccactccggccaaggacggatctatgtagcccacacagtgggcatgtgcctgcactatat |
220 |
Q |
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| T |
34225418 |
accaccactctaaccacctctgaatgcaaattttagaccaccactccggtcagggacggatctatgtagcccacacagtgggcatgtgcctgcactatat |
34225319 |
T |
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| Q |
221 |
tttgaggaannnnnnnncgtgagttctataacatgctatatgttaacattttgac |
275 |
Q |
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| T |
34225318 |
tttgaggaattttttttcgtgagttctataacatgatatatgttaacattttgac |
34225264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 277 - 573
Target Start/End: Complemental strand, 34225291 - 34224986
Alignment:
| Q |
277 |
ataacatgttatatgttaacattttgaccaacatgagtctatnnnnnnncattttgaccaacatgatccacactcatca---------aactctataaat |
367 |
Q |
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| T |
34225291 |
ataacatgatatatgttaacattttgaccaacatgactcttaaaaaaaacattttgaccaacatgacccacactcatcacacagtataaactctacaaat |
34225192 |
T |
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| Q |
368 |
tgcttatccaacataaaaaagtctattcaaagaaagaaaacaaggttaaataattgaggaatataactttttgtttctcttaaattctctctattgacgg |
467 |
Q |
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| T |
34225191 |
tgcttatccaacataaaaaagtctattcaaagaaagaaaacaaggttaaataattgaggaatataactttttgtttctcttaaattttctctattgacgg |
34225092 |
T |
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| Q |
468 |
taatcttattttgaggtgtgtgagactttgaatgtgagtttcttcccaacatttttatttgcaatgttgcaaaagtctaattccttctattatactccac |
567 |
Q |
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| T |
34225091 |
taatcctattttaaggtgtgtgagactttgaatgtgagtttcttcccgacatttttatttgcaatgttgcaagagtctaattccttctactatactccac |
34224992 |
T |
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| Q |
568 |
tacttt |
573 |
Q |
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|||||| |
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| T |
34224991 |
tacttt |
34224986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 10487100 - 10487033
Alignment:
| Q |
355 |
aaactctataaattgcttatccaacataaaaaagtctattcaaagaaagaaaacaaggttaaataattg |
423 |
Q |
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| T |
10487100 |
aaacactacaaattgcttatccaacatgaaat-gcctatttaaagaaagaaaaaaaggttaaataattg |
10487033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 5869049 - 5868998
Alignment:
| Q |
178 |
ggatctatgtagcccacacagtgggcatgtgcctgcactatattttgaggaa |
229 |
Q |
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| T |
5869049 |
ggatctatgtagcccactgtgtgggcgtgtgcctgcactatgttttgaggaa |
5868998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 42878424 - 42878371
Alignment:
| Q |
355 |
aaactctataaattgcttatccaacataa-aaaagtctattcaaagaaagaaaa |
407 |
Q |
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| T |
42878424 |
aaactctacaagttgcttatccaacataacaaaatcctattcaaagaaagaaaa |
42878371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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