View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16315_low_2 (Length: 535)
Name: NF16315_low_2
Description: NF16315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16315_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Original strand, 32811947 - 32812447
Alignment:
| Q |
13 |
aaaatagatagatattaaattccctggttgaaacgaaaatatattcaataatgtattaattgattcaaattaacattagttatacactagaaactaatgt |
112 |
Q |
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| T |
32811947 |
aaaatagatagatataaaat-ccctggttgaaacgaaaatatatt---taatgtattaattgattcaaattaactttagttatatactagaaactaatgt |
32812042 |
T |
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| Q |
113 |
tattactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaa |
212 |
Q |
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| T |
32812043 |
tattactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaa |
32812142 |
T |
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| Q |
213 |
atattcttagacaaccttgctgcattggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgattccctccacatg |
312 |
Q |
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| T |
32812143 |
atattcttagacaaccttgctgcattggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgatcccctccacatg |
32812242 |
T |
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| Q |
313 |
tcgatttcccccaccctgagatgatcaagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaactcgactttaa |
412 |
Q |
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| T |
32812243 |
tcgatttcccccaccctgagatgatcaagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaactcgactttaa |
32812342 |
T |
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| Q |
413 |
ggtttttcaattaacctctaaaaatatcaacaaactgaaggaaaaagcaaaagttaatagtattgcccgtgtcactagttttaatgtaatcaccacacat |
512 |
Q |
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| T |
32812343 |
ggtttttcaattaacctctaaaaatatcaacaaactgaaggaaaaagcaaaaattaatagtattgcccgtgtcactagttttaatgtaatcaccacacat |
32812442 |
T |
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| Q |
513 |
ctatg |
517 |
Q |
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| T |
32812443 |
ctatg |
32812447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 136 - 471
Target Start/End: Original strand, 32829599 - 32829931
Alignment:
| Q |
136 |
taacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaatattcttagacaaccttgctgc |
235 |
Q |
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|||||||||||||||||||||||||||| | ||| |||||| |||||||| | || ||||||| | |||| |||||| |||||||||||||||||| | |
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| T |
32829599 |
taacatccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatggacttagcttcaaaaatttcttagacaaccttgcttc |
32829698 |
T |
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| Q |
236 |
attggctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgattccctccacatgtcgatttcccccaccctgagatg |
335 |
Q |
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| T |
32829699 |
attggctaccaacatgaaactgactgcgacacccttccatgacagacaactcctagctgcacgatctcctccacatgtaaacttcccccaccctgagatg |
32829798 |
T |
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| Q |
336 |
atcaagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaactcgactttaaggtttttcaattaacctctaaaa |
435 |
Q |
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| T |
32829799 |
atcaagctcgataa---tctacctttaggcattaaatctggtgtctttgaagcatcctcagaagaatttgacttcatggtttttcaactgacatatgaag |
32829895 |
T |
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| Q |
436 |
atatcaacaaactgaaggaaaaagcaaaagttaata |
471 |
Q |
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| T |
32829896 |
acatcaacaaccttaaggaaaaggcaaaaggtaata |
32829931 |
T |
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