View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16315_low_3 (Length: 290)
Name: NF16315_low_3
Description: NF16315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16315_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 308625 - 308365
Alignment:
| Q |
13 |
gagatgaaggctccggtggattcaggagaagttaatctagctgcaaaaggccagtttaaccatcgtccagaaaggacagaaaggaaggaggaaagaagca |
112 |
Q |
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| T |
308625 |
gagaagaaggctccggtggattcaggagacgttaatctagctgcaaaaggccagtttaaccatcgtccagaaaggacagaaaggaaggaggaaagaagca |
308526 |
T |
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| Q |
113 |
gcaatccataccatttggacagacctgagaagcaatttgcagatgacaaagcaccctacaaggataaaaactgggagagtcaggttttgcgtcaagagaa |
212 |
Q |
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| T |
308525 |
gcaatccataccatttggacagacctgagaagcaatttgcagatgacaaagcaccctacaaggataaaaactgggagagtcaggttttgcgtcaagagaa |
308426 |
T |
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| Q |
213 |
aggcataggggcaatgctggcaatgacaattccatgggaagagataaatttgttggaaggt |
273 |
Q |
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| T |
308425 |
aggcataggggcaatgctggcaatgacaattccatgggaagagataaatttgttggaaggt |
308365 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 48117019 - 48117101
Alignment:
| Q |
78 |
tccagaaaggacagaaaggaaggaggaaagaagcagcaatccataccatttggacagacctgagaagcaatttgcagatgaca |
160 |
Q |
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| T |
48117019 |
tccagaaaggaatgaaaggaaggaggaaagaagcagcaaccctaaccatctagatagacctgagaagcgaattgcagaggaca |
48117101 |
T |
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