View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16315_low_4 (Length: 273)
Name: NF16315_low_4
Description: NF16315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16315_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 14717212 - 14717461
Alignment:
| Q |
10 |
cagaacctgtgtttttatgggtcgaccacgattgaaatcatagtcgatagacttttgaaaaatcccagcattgcctgcagtggtgactatggtggagtct |
109 |
Q |
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| T |
14717212 |
cagaacatgtgtttttatgggtcgaccacgattgaaatcatggtcgatagacttttgaaaaatcccagcattgcctgcagtggtgactatggtggagtct |
14717311 |
T |
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| Q |
110 |
acaccatgcatggcaaatagccttgccatttcaaccaatgggatgatgtgacttgtagctgagaagggaatgaaaataacctttaggttattggcttcgg |
209 |
Q |
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| T |
14717312 |
acaccatgcatggcaaatagccatgacatttcaaccaatgggatgatgtgacttgtagctgagaagggaatgaaaataacctttaggttattggcttcgg |
14717411 |
T |
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| Q |
210 |
cttcgtgagactgtatcgccattttatctctttggaggttggagatactg |
259 |
Q |
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| T |
14717412 |
cttcgtgagactgtatcgccattttatctctttggaggttggagatactg |
14717461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 17618896 - 17618647
Alignment:
| Q |
10 |
cagaacctgtgtttttatgggtcgaccacgattgaaatcatagtcgatagacttttgaaaaatcccagcattgcctgcagtggtgactatggtggagtct |
109 |
Q |
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| T |
17618896 |
cagaacatgtgtttttatgggtcgaccgcgattgaaatcatggtcgatagacttttgaaaaatcccagcattgcctgcagtggtgactatggtggagtct |
17618797 |
T |
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| Q |
110 |
acaccatgcatggcaaatagccttgccatttcaaccaatgggatgatgtgacttgtagctgagaagggaatgaaaataacctttaggttattggcttcgg |
209 |
Q |
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| T |
17618796 |
acgccatgcatggcaaatagccttgccatttcaaccaatgggatgatgtgacttgtagctgagaagggaatgaaaataacctttaggtttttggcttcgg |
17618697 |
T |
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| Q |
210 |
cttcgtgagactgtatcgccattttatctctttggaggttggagatactg |
259 |
Q |
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| T |
17618696 |
cttcgtgagactgtatcgccattttatctctttggaggttggagatactg |
17618647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 17573798 - 17573987
Alignment:
| Q |
32 |
cgaccacgattgaaatcatagtcgatagacttttgaaaaatcccagcattgcctgcagtggtgactatggtggagtctacaccatgcatggcaaatagcc |
131 |
Q |
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| T |
17573798 |
cgaccacgattgaaatcgcggtcgatggacttttggaaaattgcagcgttgcctgcggtggtgattatggtgatatcaacaccttgcatagcaaataccc |
17573897 |
T |
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| Q |
132 |
ttgccatttcaaccaatgggatgatgtgacttgtagctgagaagggaatgaaaataacctttaggttattggcttcggcttcgtgagact |
221 |
Q |
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| T |
17573898 |
ttgccatatcaaccataggaattatgtgacttgtagataagaagggaaggaaaataaccttaaggttattggctttggcttcatgagact |
17573987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 12611343 - 12611169
Alignment:
| Q |
39 |
gattgaaatcatagtcgatagacttttgaaaaatcccagcattgcctgcagtggtgactatggtggagtctacaccatgcatggcaaatagccttgccat |
138 |
Q |
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| T |
12611343 |
gattgaaatcacgatctatggacttttgaaaaatctcagcgttgcttgtggtggtgattatggtgatatccacaccatgcatagcaaatagtcttgccat |
12611244 |
T |
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| Q |
139 |
ttcaaccaatgggatgatgtgacttgtagctgagaagggaatgaaaataacctttaggttattggcttcggcttc |
213 |
Q |
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| T |
12611243 |
gtcaaccattgggatcatgtgacttgttgataagaagggaaggaaaataaccttcaggttataggcttcagcttc |
12611169 |
T |
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