View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16315_low_6 (Length: 221)

Name: NF16315_low_6
Description: NF16315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16315_low_6
NF16315_low_6
[»] chr5 (1 HSPs)
chr5 (16-205)||(3885194-3885383)
[»] chr2 (4 HSPs)
chr2 (106-153)||(2739932-2739980)
chr2 (106-153)||(20051168-20051216)
chr2 (106-153)||(22713640-22713688)
chr2 (106-153)||(39685974-39686022)
[»] chr8 (3 HSPs)
chr8 (106-153)||(4813632-4813680)
chr8 (106-153)||(25683634-25683682)
chr8 (106-153)||(28894491-28894539)
[»] chr7 (3 HSPs)
chr7 (106-153)||(3321194-3321242)
chr7 (106-153)||(7073778-7073826)
chr7 (106-153)||(25404384-25404432)
[»] chr6 (2 HSPs)
chr6 (106-153)||(13882466-13882514)
chr6 (106-153)||(35202469-35202517)
[»] chr3 (2 HSPs)
chr3 (106-153)||(47879295-47879343)
chr3 (106-153)||(54192235-54192283)
[»] chr1 (2 HSPs)
chr1 (106-153)||(2394425-2394473)
chr1 (106-153)||(9525455-9525503)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 3885194 - 3885383
Alignment:
Q  16 aatatacttagaacatggtataatatgcacgagtaattagatagttgtgtactaggttggacttggcatatgcggttagtatatcacgttggtttatggc 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3885194 aatatacttagcacatggtataatatgcacgagtaattagatagttgtgtactaggttggacttggcatatgcggttagtatatcacgttggtttatggc 3885293  T
Q  116 aaattcggatcaagtg-cctgacaagctttgaagtgggtgtttatatacttgaaacaagttcttgaaataaagttagaaatacatatgaac 205  Q
    ||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3885294 aaatttggatcaagtgccccgacaagctttgaagtgggtgtttatatacttg-aacaagttcttgaaataaagttagaaatacatatgaac 3885383  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 2739932 - 2739980
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  2739932 ggtttatggcaaatccggatcaagtgcactggcaagctttgaagtgggt 2739980  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 20051216 - 20051168
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  20051216 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 20051168  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 22713688 - 22713640
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  22713688 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 22713640  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 39685974 - 39686022
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  39685974 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 39686022  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 4813680 - 4813632
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  4813680 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 4813632  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 25683634 - 25683682
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  25683634 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 25683682  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 28894491 - 28894539
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  28894491 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 28894539  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 3321242 - 3321194
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  3321242 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 3321194  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 7073778 - 7073826
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  7073778 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 7073826  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 25404384 - 25404432
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  25404384 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 25404432  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 13882466 - 13882514
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  13882466 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 13882514  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 35202517 - 35202469
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  35202517 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 35202469  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 47879343 - 47879295
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  47879343 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 47879295  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 54192235 - 54192283
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  54192235 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 54192283  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 2394473 - 2394425
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  2394473 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 2394425  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 9525455 - 9525503
Alignment:
Q  106 ggtttatggcaaattcggatcaagtgc-ctgacaagctttgaagtgggt 153  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  9525455 ggtttatggcaaatccgggtcaagtgcactggcaagctttgaagtgggt 9525503  T

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