View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16316_high_3 (Length: 392)
Name: NF16316_high_3
Description: NF16316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16316_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 32941848 - 32941562
Alignment:
| Q |
13 |
attatactctctcatacattaaccatttaattaccacttttgcttatagttcgttctcaaaaaccaaataatattttaatcaatacttataataattgta |
112 |
Q |
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| T |
32941848 |
attatactctctcatacattaaccatttaattaccacttttgcttatagttcgttctcaaaaaccaaataatattttaatcaatacttataataattgta |
32941749 |
T |
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| Q |
113 |
aagattaatttgtctatttactcacaaatatattatcagaaaaatagaatatcaacaacacttttagttcagtgtatgtcatacccataaataagaacct |
212 |
Q |
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| T |
32941748 |
aagattaatttgtctatttactcacaaatatattatcagaaaaatagaatataaacaacacttttagttcagtgtatgtcatacccataaataagaacct |
32941649 |
T |
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| Q |
213 |
tcttgtgtaccatcaataattcctactgcatcagattgtacgttaaacgtgcttctctttttgagcaaactcgacacctaagatatg |
299 |
Q |
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| T |
32941648 |
tcttgtgtaccatcaataattcctactgcatctgattgtacgttaaacgtgcttctctttttgagcaaactcgacacctaagatatg |
32941562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 11823707 - 11823665
Alignment:
| Q |
190 |
gtcatacccataaataagaaccttcttgtgtaccatcaataat |
232 |
Q |
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| T |
11823707 |
gtcatacccatagataagaaccttcttgggttccatcaataat |
11823665 |
T |
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