View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16316_low_1 (Length: 591)
Name: NF16316_low_1
Description: NF16316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16316_low_1 |
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| [»] scaffold0101 (1 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 65 - 302
Target Start/End: Complemental strand, 6869178 - 6868942
Alignment:
| Q |
65 |
tattagagtatctattaagacaagcttagtatagagtacttgtatctaagcctagtcttattgtaactggcaagtgtaagttaagccttacacttgacct |
164 |
Q |
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||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6869178 |
tattagagtatctgttaagataagcttagcatagagtatttgtatctaagcctagtcttattgtaactggcaagtgtaagttaagccttacacttgacct |
6869079 |
T |
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| Q |
165 |
gttattacagattatctgaattcatctatataagatgaaatgtatcagaattctt-attcaatgaaaaatcagaatttagatccagaaagttagttagat |
263 |
Q |
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| T |
6869078 |
gctattacaggttacctgaattcatctatataagatgaaatgtaacagaattcttcattcaatg--aaatcagaatttagatccagaaagttagttagat |
6868981 |
T |
|
| Q |
264 |
caaaaagatatttctctctctactccttcaaattttata |
302 |
Q |
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||||||||||| |||||||||||||||||||| |||||| |
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| T |
6868980 |
caaaaagatatgtctctctctactccttcaaactttata |
6868942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 65 - 287
Target Start/End: Complemental strand, 8087433 - 8087211
Alignment:
| Q |
65 |
tattagagtatctattaagacaagcttagtatagagtacttgtatctaagcctagtcttattgtaactggcaagtgtaagttaagccttacacttgacct |
164 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8087433 |
tattagagtatctgttaagagaagcttagtatagagtgtttgtatctaagcctagtcttattgtaactggcaagtgtaagtaaagccttacacttgacct |
8087334 |
T |
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| Q |
165 |
gttattacagattatctgaattcatctatataagatgaaatgtatcagaattctt-attcaatgaaaaatcagaatttagatccagaaagttagttagat |
263 |
Q |
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| T |
8087333 |
gctattacaggttacctgaattcatctatataagatgaaatgtaacagaattcttcattcaatg-aaaatcagaatttagattcagaaagttagttagat |
8087235 |
T |
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| Q |
264 |
caaaaagatatttctctctctact |
287 |
Q |
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|||||||||||||||||||||||| |
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| T |
8087234 |
caaaaagatatttctctctctact |
8087211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 20801 - 21005
Alignment:
| Q |
104 |
ttgtatctaagcctagtcttattgtaactggcaagtgtaagttaagccttacacttgacctgttattacagattatctgaattcatctatataagatgaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
20801 |
ttgtatctaagcctagtcttattgtaactggcaagtgtaagttaagccttacacttgacctgctattacaggttacctgaattcatctatataagatgaa |
20900 |
T |
|
| Q |
204 |
atgtatcagaattctt-attcaatgaaaaatcagaatttagatccagaaagttagttagatcaaaaagatatttctctctctactccttcaaattttata |
302 |
Q |
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||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
20901 |
atgtaacagaattcttcattcaatg-aaaatcagaatttagatccagaaagttagttagatcaaaaagacatttctctctctactccttcaaactttata |
20999 |
T |
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| Q |
303 |
tggtat |
308 |
Q |
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||||| |
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| T |
21000 |
aggtat |
21005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33062 - 33125
Alignment:
| Q |
1 |
aagagtaaaacatacgacaaagtcgaggtccatcaacgatctcgcaaacgacctactcattcac |
64 |
Q |
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| T |
33062 |
aagagtaaaacatacgacaaagtcgaggtccatcaacgatctcgcaaacgacctactcattcac |
33125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39683 - 39746
Alignment:
| Q |
1 |
aagagtaaaacatacgacaaagtcgaggtccatcaacgatctcgcaaacgacctactcattcac |
64 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
39683 |
aagagtaaaacatacgacaaagtcgaggtccatcaatgatctttcaaacgacgtactcattcac |
39746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 302
Target Start/End: Original strand, 32180165 - 32180343
Alignment:
| Q |
124 |
attgtaactggcaagtgtaagttaagccttacacttgacctgttattacagattatctgaattcatctatataagatgaaatgtatca-gaattctt-at |
221 |
Q |
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| T |
32180165 |
attgtaactggcaagtgtgagtaaagccttacacttgacttgctattgtaggttccctcaatccatctataaaagatggaatgtaacataaattattcat |
32180264 |
T |
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| Q |
222 |
tcaatgaaaaatcagaatttagatccagaaagttagttagatcaaaaagatatttctctctctactccttcaaattttata |
302 |
Q |
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|||||||||| |||| ||| || | |||||||||||||||||| | ||||||||||||||||||||||| | |||||||| |
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| T |
32180265 |
tcaatgaaaagtcag-attcag-ttcagaaagttagttagatctattagatatttctctctctactcctttagattttata |
32180343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 32461075 - 32460985
Alignment:
| Q |
462 |
gcttcgatccgctccaacttcgtcttctcactcaagatctccgagaaactcaacgagaagaattttctcatctggcaccaacaggtagaac |
552 |
Q |
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|||||| | |||||| | ||| |||||||||| |||||||| ||||| |||||||||||||| || || | |||| ||||||||| |||| |
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| T |
32461075 |
gcttcgtttcgctccgatttcttcttctcactgaagatctctgagaagctcaacgagaagaacttccttgtttggcgccaacaggttgaac |
32460985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 39582875 - 39582911
Alignment:
| Q |
267 |
aaagatatttctctctctactccttcaaattttatat |
303 |
Q |
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|||||||||||||| |||||||||||||| ||||||| |
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| T |
39582875 |
aaagatatttctctttctactccttcaaactttatat |
39582911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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