View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16316_low_2 (Length: 526)
Name: NF16316_low_2
Description: NF16316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16316_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 42798424 - 42798927
Alignment:
| Q |
1 |
taatgtagttataagttcattcagacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcttgatc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42798424 |
taatgtagttataagttcatttagacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatc |
42798523 |
T |
|
| Q |
101 |
catgacaggcagggaagtgtagagcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42798524 |
catgacaggcagggaagtgtagagcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataa |
42798623 |
T |
|
| Q |
201 |
tcacagtaactggatctgttgcttttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798624 |
tcacagtaactggatctgttgcttttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttg |
42798723 |
T |
|
| Q |
301 |
caaagagtacaggttttaaagcagtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798724 |
caaagagtacaggttttaaagcagtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaa |
42798823 |
T |
|
| Q |
401 |
ggagtcttatcgagtgtattcaaagacttgtagaaatggactgggaggtgaagatatgccactcatatcatgaagcaaagaatataatgatgctttgact |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
42798824 |
ggagtcttatcgagtgtattcaaagacttgtagaaatggactgggaggtgaagatatgccactcgtatcatgaagcaaagaatataatgatgctttgatt |
42798923 |
T |
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| Q |
501 |
gttt |
504 |
Q |
| |
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|||| |
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| T |
42798924 |
gttt |
42798927 |
T |
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