View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16316_low_5 (Length: 295)
Name: NF16316_low_5
Description: NF16316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16316_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 33233379 - 33233547
Alignment:
| Q |
124 |
cctccattgcttctaaagccattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcatcttcacattcat |
223 |
Q |
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| T |
33233379 |
cctccattgcttctaaagtcattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcatcttcacattcat |
33233478 |
T |
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| Q |
224 |
tgcttttgaactcactatactccttatgtgtgctttcttcacttggtttcttcttcgttttcttcatct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33233479 |
tgcttttgaactcactatactccttatgtgtgctttcttcacttggtttcttcttctttttcttcatct |
33233547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 278
Target Start/End: Original strand, 33233761 - 33233914
Alignment:
| Q |
128 |
cattgcttctaaagccattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcat---cttcacattcatt |
224 |
Q |
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| T |
33233761 |
cattgcttctaaagccgttaccttcctcaagtgcgtttccttcaattagcttccgcttctttttcatcttctttccttggtcatcatcttcacattcatt |
33233860 |
T |
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| Q |
225 |
gcttttgaactcactatactccttatgtgtgctttcttcacttggtttcttctt |
278 |
Q |
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| T |
33233861 |
gctattgaactcattatacttcttatgattgctttcttcactcagtttcttctt |
33233914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 33233575 - 33233704
Alignment:
| Q |
128 |
cattgcttctaaagccattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcatc---ttcacattcatt |
224 |
Q |
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| T |
33233575 |
cattgcttctaaagtcattacattccatcagtgtgtttccttcaattag------cttctttttcatcttctttccttggtcatcagcttcacattcatt |
33233668 |
T |
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| Q |
225 |
gcttttgaactcactatactccttatgtgtgctttc |
260 |
Q |
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| T |
33233669 |
acttttgaactcgttatactccttatgtttgctttc |
33233704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33233262 - 33233318
Alignment:
| Q |
11 |
catcatcatcttcacattcattgggtt----caaacttgctatactccttacgttta |
63 |
Q |
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| T |
33233262 |
catcatcatcttcacattcattgggttaattcaaacttgctatactccttacgttta |
33233318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 33233301 - 33233355
Alignment:
| Q |
238 |
ctatactccttatgtgtgctttcttcacttggtttcttcttcgttttcttcatct |
292 |
Q |
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| T |
33233301 |
ctatactccttacgtttactttcttcacttagtttcttcttctttttcttcatct |
33233355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 34156385 - 34156272
Alignment:
| Q |
168 |
ttcaattagtttgtgcttctttttcgtcttttttccttggtcatc---ttcacattcattgcttttgaactcactatactccttatgtgtgctttcttca |
264 |
Q |
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||||||||| || ||||||||||| |||| |||||||||||||| ||||||||||||||| | ||||||| |||||| |||||| |||| |||||| |
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| T |
34156385 |
ttcaattagcttccgcttctttttcatcttctttccttggtcatcatcttcacattcattgctatcgaactcattatacttcttatgattgctctcttca |
34156286 |
T |
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| Q |
265 |
cttggtttcttctt |
278 |
Q |
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|| |||||||||| |
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| T |
34156285 |
ctcagtttcttctt |
34156272 |
T |
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