View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16317_high_11 (Length: 339)

Name: NF16317_high_11
Description: NF16317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16317_high_11
NF16317_high_11
[»] chr2 (27 HSPs)
chr2 (63-227)||(25539060-25539224)
chr2 (64-227)||(19491983-19492147)
chr2 (69-223)||(27406848-27407001)
chr2 (40-227)||(31023331-31023516)
chr2 (68-219)||(5395445-5395596)
chr2 (42-227)||(15627771-15627958)
chr2 (119-220)||(41002117-41002220)
chr2 (119-216)||(16766892-16766989)
chr2 (119-220)||(974429-974533)
chr2 (87-227)||(8428298-8428436)
chr2 (138-227)||(34841705-34841795)
chr2 (117-227)||(19245686-19245799)
chr2 (119-219)||(21869256-21869359)
chr2 (126-227)||(24473931-24474035)
chr2 (122-220)||(34577986-34578084)
chr2 (156-220)||(20034156-20034220)
chr2 (42-144)||(13502963-13503063)
chr2 (124-220)||(7301884-7301982)
chr2 (154-219)||(26251656-26251722)
chr2 (37-98)||(19245259-19245320)
chr2 (156-227)||(35565872-35565939)
chr2 (41-105)||(19257473-19257537)
chr2 (180-227)||(13502588-13502635)
chr2 (151-228)||(31578143-31578218)
chr2 (158-214)||(27524036-27524092)
chr2 (151-227)||(31237891-31237967)
chr2 (41-85)||(34577811-34577855)
[»] chr1 (16 HSPs)
chr1 (63-223)||(17055838-17055997)
chr1 (36-223)||(18891513-18891702)
chr1 (50-227)||(27917287-27917462)
chr1 (18-125)||(18337458-18337565)
chr1 (119-212)||(24117600-24117694)
chr1 (156-220)||(12002793-12002857)
chr1 (156-220)||(17197462-17197526)
chr1 (151-227)||(42179979-42180055)
chr1 (128-227)||(18337207-18337300)
chr1 (151-227)||(47785998-47786072)
chr1 (180-227)||(16434677-16434725)
chr1 (156-227)||(23528800-23528870)
chr1 (157-226)||(9954949-9955019)
chr1 (151-223)||(16446676-16446749)
chr1 (151-227)||(9351978-9352053)
chr1 (151-227)||(25146684-25146759)
[»] chr4 (30 HSPs)
chr4 (52-227)||(4156893-4157066)
chr4 (41-212)||(18459546-18459717)
chr4 (63-227)||(8011051-8011214)
chr4 (101-227)||(7044851-7044977)
chr4 (16-202)||(7825044-7825239)
chr4 (42-227)||(7452540-7452720)
chr4 (38-134)||(6346992-6347087)
chr4 (16-185)||(7815641-7815819)
chr4 (117-219)||(9149646-9149749)
chr4 (50-178)||(7803125-7803261)
chr4 (36-140)||(24719621-24719725)
chr4 (40-227)||(10394629-10394825)
chr4 (153-227)||(6346870-6346944)
chr4 (121-220)||(55476082-55476183)
chr4 (151-227)||(7045080-7045156)
chr4 (154-219)||(18403670-18403735)
chr4 (160-227)||(24719722-24719789)
chr4 (154-220)||(8409723-8409789)
chr4 (92-227)||(5943162-5943298)
chr4 (119-211)||(8743708-8743803)
chr4 (154-210)||(5846050-5846106)
chr4 (151-227)||(17466218-17466293)
chr4 (165-220)||(8020723-8020778)
chr4 (158-223)||(5884212-5884277)
chr4 (151-227)||(5375803-5375879)
chr4 (151-227)||(9911326-9911401)
chr4 (156-227)||(36120968-36121037)
chr4 (156-223)||(10143043-10143110)
chr4 (32-85)||(18327443-18327496)
chr4 (32-85)||(18437901-18437954)
[»] chr5 (21 HSPs)
chr5 (50-227)||(43005774-43005953)
chr5 (52-227)||(24648065-24648231)
chr5 (119-220)||(41427510-41427614)
chr5 (137-224)||(26021444-26021532)
chr5 (119-220)||(19377704-19377808)
chr5 (52-110)||(26021395-26021453)
chr5 (119-227)||(15446302-15446413)
chr5 (123-214)||(30804032-30804124)
chr5 (119-214)||(187812-187909)
chr5 (166-227)||(9996898-9996959)
chr5 (119-204)||(22984751-22984839)
chr5 (119-227)||(30799497-30799606)
chr5 (164-220)||(15052025-15052081)
chr5 (151-227)||(19579081-19579157)
chr5 (119-167)||(13349509-13349558)
chr5 (151-227)||(18843854-18843929)
chr5 (41-112)||(4289921-4289992)
chr5 (151-202)||(19979738-19979789)
chr5 (119-187)||(29270235-29270303)
chr5 (151-227)||(20321081-20321157)
chr5 (151-227)||(23172343-23172418)
[»] chr7 (19 HSPs)
chr7 (50-223)||(26565467-26565638)
chr7 (49-227)||(21157598-21157775)
chr7 (50-225)||(30294291-30294458)
chr7 (119-220)||(1981257-1981360)
chr7 (44-152)||(24915794-24915901)
chr7 (122-220)||(25842665-25842765)
chr7 (119-219)||(17809050-17809151)
chr7 (122-220)||(23618363-23618463)
chr7 (17-112)||(25842879-25842975)
chr7 (151-227)||(5058668-5058743)
chr7 (164-220)||(8254040-8254096)
chr7 (156-227)||(20570800-20570870)
chr7 (154-219)||(7307140-7307204)
chr7 (151-227)||(4247495-4247570)
chr7 (151-227)||(44944760-44944835)
chr7 (121-220)||(8629662-8629761)
chr7 (151-227)||(24725387-24725467)
chr7 (175-227)||(4574879-4574931)
chr7 (159-220)||(8304218-8304281)
[»] chr8 (18 HSPs)
chr8 (16-227)||(15761273-15761484)
chr8 (91-227)||(8582121-8582257)
chr8 (121-227)||(26575038-26575147)
chr8 (125-227)||(1018096-1018199)
chr8 (123-210)||(16752119-16752208)
chr8 (119-213)||(40541761-40541858)
chr8 (151-227)||(11879739-11879814)
chr8 (151-227)||(11897155-11897230)
chr8 (117-183)||(17566213-17566280)
chr8 (151-227)||(6810960-6811034)
chr8 (151-219)||(3094165-3094233)
chr8 (156-227)||(23142319-23142388)
chr8 (158-227)||(29384227-29384300)
chr8 (50-105)||(24056523-24056578)
chr8 (156-227)||(45403173-45403244)
chr8 (180-220)||(2040274-2040314)
chr8 (157-229)||(5922194-5922265)
chr8 (151-227)||(27836379-27836454)
[»] chr3 (35 HSPs)
chr3 (20-189)||(10872817-10872987)
chr3 (16-227)||(27676440-27676650)
chr3 (39-186)||(17796593-17796742)
chr3 (39-186)||(19105033-19105182)
chr3 (63-152)||(24649598-24649686)
chr3 (225-337)||(26129080-26129187)
chr3 (225-337)||(26179136-26179243)
chr3 (259-339)||(26205094-26205174)
chr3 (16-169)||(15806407-15806551)
chr3 (156-220)||(8592333-8592397)
chr3 (135-220)||(9169782-9169868)
chr3 (122-220)||(19348648-19348748)
chr3 (119-227)||(6861054-6861165)
chr3 (259-339)||(26110811-26110891)
chr3 (227-327)||(26127784-26127879)
chr3 (227-327)||(26177834-26177929)
chr3 (122-220)||(22970903-22971004)
chr3 (292-337)||(26139784-26139829)
chr3 (151-227)||(42696986-42697062)
chr3 (123-220)||(18014089-18014186)
chr3 (267-339)||(26233165-26233237)
chr3 (174-218)||(28135923-28135967)
chr3 (151-227)||(28745915-28745990)
chr3 (151-227)||(39428041-39428117)
chr3 (151-227)||(15515173-15515246)
chr3 (173-223)||(15806302-15806352)
chr3 (26-117)||(28135816-28135907)
chr3 (169-220)||(10591789-10591840)
chr3 (197-227)||(6136484-6136514)
chr3 (197-227)||(13286128-13286158)
chr3 (154-227)||(23649368-23649441)
chr3 (227-272)||(26201939-26201984)
chr3 (41-85)||(3041200-3041244)
chr3 (191-223)||(10872634-10872666)
chr3 (36-102)||(24263358-24263426)
[»] chr6 (18 HSPs)
chr6 (41-227)||(4841744-4841928)
chr6 (118-223)||(18490558-18490664)
chr6 (63-166)||(3573866-3573969)
chr6 (117-214)||(31407397-31407497)
chr6 (119-227)||(33593078-33593189)
chr6 (132-227)||(20400001-20400099)
chr6 (136-219)||(5422582-5422665)
chr6 (119-219)||(7621902-7622006)
chr6 (49-152)||(18490784-18490886)
chr6 (117-227)||(20432521-20432633)
chr6 (151-227)||(23897950-23898025)
chr6 (158-214)||(27890519-27890575)
chr6 (154-209)||(645415-645470)
chr6 (122-214)||(24209648-24209745)
chr6 (151-227)||(26053211-26053286)
chr6 (151-227)||(26073264-26073339)
chr6 (156-227)||(7918265-7918333)
chr6 (151-227)||(17250196-17250270)
[»] scaffold0603 (1 HSPs)
scaffold0603 (86-227)||(8874-9015)
[»] scaffold0048 (2 HSPs)
scaffold0048 (41-152)||(48688-48798)
scaffold0048 (41-130)||(61304-61392)
[»] scaffold0115 (1 HSPs)
scaffold0115 (118-227)||(34904-35014)
[»] scaffold1178 (1 HSPs)
scaffold1178 (119-220)||(426-530)
[»] scaffold0017 (1 HSPs)
scaffold0017 (123-210)||(38475-38565)
[»] scaffold0061 (1 HSPs)
scaffold0061 (159-210)||(76257-76308)
[»] scaffold0027 (1 HSPs)
scaffold0027 (122-220)||(133049-133149)
[»] scaffold0684 (1 HSPs)
scaffold0684 (119-220)||(5146-5249)
[»] scaffold0534 (1 HSPs)
scaffold0534 (117-183)||(785-852)
[»] scaffold0186 (1 HSPs)
scaffold0186 (151-227)||(8582-8655)
[»] scaffold0001 (1 HSPs)
scaffold0001 (119-204)||(142722-142810)
[»] scaffold0036 (1 HSPs)
scaffold0036 (129-174)||(37057-37103)
[»] scaffold0526 (1 HSPs)
scaffold0526 (156-220)||(8288-8351)
[»] scaffold0259 (1 HSPs)
scaffold0259 (50-90)||(18165-18205)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 25539224 - 25539060
Alignment:
Q  63 ttcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaa-ctgagtcat 161  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||| ||||||| |||||||||    
T  25539224 ttcatacaaaatcgcaggattttaaagggttttgtagaattttgtccattttt-ttagtcatttatttataagtattttgtggactttaaactgagtcat 25539126  T
Q  162 ttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||    
T  25539125 ttatgactatatacaatatataacatatatttagcattatttctgttttggtaaaatctatcgatt 25539060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 19491983 - 19492147
Alignment:
Q  64 tcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaacttt-aactgagtcatt 162  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||| ||| |||| |||    
T  19491983 tcatacaaaatcgcaggattttaaagggttttgaagaattttatccatt-ttgttagtcatttatgtataagtattctgtggactttaaacagagttatt 19492081  T
Q  163 tatgactatatacaatatataacatatgtttatcattatt-tttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||| |||||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  19492082 tatgactatatacaatttataacatatatttagcattattattttttttggtaaaatccatcgatt 19492147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 27406848 - 27407001
Alignment:
Q  69 caaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaa-ctgagtcatttatga 167  Q
    |||||||||| |||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||| ||||||| ||||||||||||| |    
T  27406848 caaaatcgcatgattttaaagggttttgaagaattttgtcc-ttattgt-agtcatttatgtatatgtattttgtggactttaaactgagtcatttatta 27406945  T
Q  168 ctatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    ||||||||| | ||||| |||| |||| |||||||||||||||||| |||||||||    
T  27406946 ctatatacagtttataatatatatttagcattatttttgttttggtgaaatccatc 27407001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 31023331 - 31023516
Alignment:
Q  40 taaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtatt 139  Q
    |||||||| |||||||| ||||||  ||||||||||| | ||||||||| || |||||||||||||||| ||| ||  ||||||||| ||||||||||||    
T  31023331 taaaatcgcacaaaatcttgaaatctatacaaaatcgtaggattttaaaagggtttgaagaattttgtcaattttt--tagtcatttttgtataagtatt 31023428  T
Q  140 ttgtgaactttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    | ||| |||| |||| | |  ||||||||||| ||| || |||||||||| |||| |||||||||| |||||||||||||||||||||    
T  31023429 tggtggacttaaactaattagtttatgactatttactatttataacatatatttaacattatttttattttggtaaaatccatcgatt 31023516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 5395596 - 5395445
Alignment:
Q  68 acaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataa-gtattttgtgaactttaact-gagtcatttat 165  Q
    ||||||| ||| ||||||||||||| || ||  |||||||||||| ||  ||||||||||||||||| |||||| ||| ||||||| | | |||||||||    
T  5395596 acaaaattgcaggattttaaagggtcttaaatgattttgtccattttt--tagtcatttatgtataaagtatttggtggactttaaattgggtcatttat 5395499  T
Q  166 gactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    ||||||||||||| |||||||||| || | ||||||||||||||||||||||||    
T  5395498 gactatatacaatttataacatattttgaacattatttttgttttggtaaaatc 5395445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 15627771 - 15627958
Alignment:
Q  42 aaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtcca-ttgttgttagtcatttatgtataagtattt 140  Q
    |||||| ||||||  ||||||||||||||||||| || |||||||||||||||  ||| |||||||||| || || |||||||||||| |||||||||||    
T  15627771 aaatcgcacaaaactgtgaaattcatacaaaatcacaggattttaaagggtttcaaaggattttgtccatttttttttagtcatttatatataagtattt 15627870  T
Q  141 tgtgaacttt-aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    || | ||||| |||| ||||||||| ||| ||||| ||| || |||||||  ||| | || ||||| | ||| |||||||||||||||    
T  15627871 tgcgcactttaaactaagtcatttacgacaatatataatttaaaacatatacttaaccttttttttttgttgataaaatccatcgatt 15627958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 41002117 - 41002220
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    ||||||||||||||| |||||||||| ||||| ||||  |||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||| |    
T  41002117 agtcatttatgtatatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtaga 41002216  T
Q  217 atcc 220  Q
    ||||    
T  41002217 atcc 41002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 16766892 - 16766989
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    |||||||||||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||| ||||||| || |||| |||||||||||||||||||||    
T  16766892 agtcatttatgt-taagttttttgtggactttaaactgagtcatttatgactgtatacaatttataacaaatatttagcattatttttgttttggtaaa 16766989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 974429 - 974533
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||||| |||||||||| ||||| ||||   |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||     
T  974429 agtcatttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtag 974528  T
Q  216 aatcc 220  Q
    |||||    
T  974529 aatcc 974533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 8428298 - 8428436
Alignment:
Q  87 aagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaactgagtcatttatgactatatacaatatataaca 186  Q
    |||| |||||||  |||| ||||| | || |||||||||||||||||| ||||||||| ||||  || |||| ||||||||||||||| ||| ||||| |    
T  8428298 aaggattttgaaagatttagtccactttttttagtcatttatgtataaatattttgtggactt--accgagtaatttatgactatatataatttataata 8428395  T
Q  187 tatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||  ||| ||||||||||||||||||| ||| ||||||||    
T  8428396 tatagttagcattatttttgttttggtataattcatcgatt 8428436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 34841705 - 34841795
Alignment:
Q  138 ttttgtgaactttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||| ||||||| |||||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||| | || ||||||||||||    
T  34841705 ttttgtggactttaaactgagttatttatgactatatacaatttataacatatatttattattatttttgtttggatagaatccatcgatt 34841795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 19245686 - 19245799
Alignment:
Q  117 ttagtcatttatgtataagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggt 213  Q
    ||||||||||||| | |||||||||||| |||||||    ||||||||||||||||| || |||| | || ||||| |||| |||||||||| |||||||    
T  19245686 ttagtcatttatgcaaaagtattttgtggactttaaactttgagtcatttatgactacatgcaatttctatcatatatttaacattatttttattttggt 19245785  T
Q  214 aaaatccatcgatt 227  Q
    | ||||||||||||    
T  19245786 agaatccatcgatt 19245799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 21869359 - 21869256
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||||| |||||||||| ||||| ||||   ||| |||||||||||||| |||| |||||||||| |||| ||| |||||||||||||||     
T  21869359 agtcatttatgtatatgtattttgtggactttgaactttaagttatttatgactatatgcaatttataacatatatttagcataatttttgttttggtag 21869260  T
Q  216 aatc 219  Q
    ||||    
T  21869259 aatc 21869256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 24473931 - 24474035
Alignment:
Q  126 tatgtataagtattttgtg-aactttaactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccat 222  Q
    ||||||||||||||||||| || |||||||   |||||||||| ||||||| |||| |||| ||| | |||||||||| ||||||||||||| ||||||     
T  24473931 tatgtataagtattttgtggaattttaacttttagtcatttataactatatgcaatttatatcatctatttatcattaattttgttttggtagaatccaa 24474030  T
Q  223 cgatt 227  Q
    |||||    
T  24474031 cgatt 24474035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 34577986 - 34578084
Alignment:
Q  122 catttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    |||||||||||| |||||||||| ||||| ||||  ||||||||||||||||   |||| |||||||||| |||| ||||||||||||||||||| ||||    
T  34577986 catttatgtatatgtattttgtggactttgaactttagtcatttatgactatg--caatttataacatatatttaacattatttttgttttggtagaatc 34578083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20034220 - 20034156
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||||| ||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  20034220 agtcatttatgagtatatgcaatttataacatatatttaacattatttttgttttggtagaatcc 20034156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 13503063 - 13502963
Alignment:
Q  42 aaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtatttt 141  Q
    |||||| ||||| ||||||||| ||| ||||||| || ||||||||| ||||||| || |||| || |||| || |  ||||||||||||||||||||||    
T  13503063 aaatcgcacaaactcgtgaaatccatgcaaaatcacaggattttaaaaggttttggaggatttagttcattttttt--gtcatttatgtataagtatttt 13502966  T
Q  142 gtg 144  Q
    |||    
T  13502965 gtg 13502963  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 7301884 - 7301982
Alignment:
Q  124 tttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||| ||| |||||||||| ||||| ||||  ||||||||||||| |||| |||| |||||||||| |||| |||||||||| |||||||| |||||    
T  7301884 tttatgcatatgtattttgtggactttgaactttagtcatttatgaccatatgcaatttataacatatatttaacattatttttattttggtagaatcc 7301982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 26251656 - 26251722
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttg-ttttggtaaaatc 219  Q
    |||||||||||||||||||| |||| |||||||||| |||| ||||||||||| |||||||| ||||    
T  26251656 tgagtcatttatgactatatgcaatttataacatatatttaccattatttttgattttggtagaatc 26251722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 19245259 - 19245320
Alignment:
Q  37 tagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaa 98  Q
    ||||||||| | ||||||||||||||| ||| |||| ||||||||||||||||| |||||||    
T  19245259 tagtaaaattgcacaaaatcgtgaaatccatgcaaagtcgcaagattttaaaggattttgaa 19245320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 35565939 - 35565872
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||||||||||||| |||||||||| |||   | ||||||| |||||||||||||||||||||    
T  35565939 agtcatttatgactatatacaatttataacatatattt---agtattttt-ttttggtaaaatccatcgatt 35565872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 19257537 - 19257473
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaatttt 105  Q
    ||||||| ||||||| ||||||| ||| |||||||||| ||||||||||  ||||||||||||||    
T  19257537 aaaatcgcacaaaattgtgaaatccattcaaaatcgcaggattttaaagaattttgaagaatttt 19257473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 13502635 - 13502588
Alignment:
Q  180 tataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||    
T  13502635 tataacatatatttaatattatttttgttttggtaaaatccatcgatt 13502588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 31578143 - 31578218
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatta 228  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  ||||||||  ||| | ||||||||||||||||    
T  31578143 aactaagtcatttatgactatataccatttataacatatatttagtattatttt--tttggttaaaatccatcgatta 31578218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 27524092 - 27524036
Alignment:
Q  158 tcatttatgactatatacaatatataacatatgtttatcattatttttgttttggta 214  Q
    |||||||||| ||||| |||| ||||| |||| |||| |||||||||||||||||||    
T  27524092 tcatttatgaatatatgcaatttataatatatatttaacattatttttgttttggta 27524036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 31237967 - 31237891
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttat-cattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||| ||||||| || |||||||||| || ||  |||||| || |||||||||||||||||||||    
T  31237967 aactaagtcatttatgattatataccatttataacatatattcatgtattattatt-ttttggtaaaatccatcgatt 31237891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 34577811 - 34577855
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagatttt 85  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||||||    
T  34577811 aaaatcgcacaaaatcgtggaattcattcaaaatcgcaggatttt 34577855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 17055997 - 17055838
Alignment:
Q  63 ttcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaacttt-aactgagtcat 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  17055997 ttcatacaaaatcgcaagattttaaagggttttgaagaattttgtcgatttttgttagtcatttatgtataagtattttgtggactttaaattgagtcat 17055898  T
Q  162 ttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
     |||||||||||| ||| |||| ||||  |||| ||||||||||||||||||||||||||||    
T  17055897 atatgactatatataatttatagcata--tttagcattatttttgttttggtaaaatccatc 17055838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 18891702 - 18891513
Alignment:
Q  36 ctagtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataa 134  Q
    |||||||||||| | |||||||||||||||||||| |||| ||| ||||||||||||||||||||  | ||||||||| || |||| |||||||||||||    
T  18891702 ctagtaaaatcgcatcaaaatcgtgaaattcatacgaaattgcacgattttaaagggttttgaagtctattgtccattttttttagccatttatgtataa 18891603  T
Q  135 gtattttgt-gaactttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    ||||||||| ||| || |||||| |||||||||||||| || ||| ||||| |||| |||| ||||||||| ||||||||||||| ||||    
T  18891602 gtattttgtggaatttaaactgaatcatttatgactatctataatttataatatatatttaacattattttcgttttggtaaaattcatc 18891513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 227
Target Start/End: Complemental strand, 27917462 - 27917287
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactt 149  Q
    |||||| |||||||||||||||||| | | ||||||||||||||||| || || || | |||| |  |||||||||||||||||||||||||||||  ||    
T  27917462 caaaattgtgaaattcatacaaaattggaggattttaaagggttttggaggatgttttacattttgtttagtcatttatgtataagtattttgtgacttt 27917363  T
Q  150 taactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
     |||||||| |||||||||||||||| || ||||| |||| |||  |||||||| |||||  ||||||| ||||||||    
T  27917362 aaactgagttatttatgactatatacgatttataatatatattttgcattatttatgttt--gtaaaattcatcgatt 27917287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 18337565 - 18337458
Alignment:
Q  18 cccaaaaaaggcagaatactagtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttg 116  Q
    ||||||| ||||| ||| |||||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| |||| |||||||||||||| ||     
T  18337565 cccaaaataggcaaaatcctagtaaaatcgcatcaaaatcgtgaaatccatacaaaatcgtaggattttaaagggtcttgatgaattttgtccatt-ttt 18337467  T
Q  117 ttagtcatt 125  Q
    |||||||||    
T  18337466 ttagtcatt 18337458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 24117600 - 24117694
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaa---ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttgg 212  Q
    ||||||||||||||| ||||||||||||||||||    |||||||||||||||||||| |||| || ||||||  |||| |||||||||||||||||    
T  24117600 agtcatttatgtatatgtattttgtgaactttaaattttgagtcatttatgactatatgcaatttaaaacata--tttagcattatttttgttttgg 24117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 12002857 - 12002793
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  12002857 agtcatttatgactatatgcaatttataacatatatttagcattatttttgttttggtagaatcc 12002793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 17197526 - 17197462
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||||||||||| |||| | |||||||| |||| ||||||||||||||||||| |||||    
T  17197526 agtcatttatgactatatgcaatttgtaacatatatttaacattatttttgttttggtagaatcc 17197462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 42180055 - 42179979
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| | ||  ||||| ||| |||||||||||||||||||||    
T  42180055 aactaagtcatttatgactatataccatttataacatatatatagtattatattttttttggtaaaatccatcgatt 42179979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 18337300 - 18337207
Alignment:
Q  128 tgtataagtattttgtgaactttaac--tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcga 225  Q
    ||||| ||||||||||| | |||||   ||||||||||||||||||||||||| ||||||        ||||| ||||||||||||||||||||||||||    
T  18337300 tgtatgagtattttgtggattttaaacttgagtcatttatgactatatacaatttataac--------atcatcatttttgttttggtaaaatccatcga 18337209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 47785998 - 47786072
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  ||||||||  || ||||||||||||||||||    
T  47785998 aactaagtcatttatgactatataccatttataacatatatttagtattatttt--ttgtggtaaaatccatcgatt 47786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 16434677 - 16434725
Alignment:
Q  180 tataacatatgtttatcatta-tttttgttttggtaaaatccatcgatt 227  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  16434677 tataacatatatttatcattaatttttgttttggtagaatccatcgatt 16434725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 23528800 - 23528870
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||| || |||||| ||| ||||| |||||| ||  || |||||||||||||||||    
T  23528800 agtcatttatgactatataccatttataacgtatatttattattattatt-attgggtaaaatccatcgatt 23528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 9955019 - 9954949
Alignment:
Q  157 gtcatttatgactatatacaatatataacatatgtttatcattatttttgttttg-gtaaaatccatcgat 226  Q
    ||||||||||||||||||| || |||||||||| || |  |||||| || ||||| |||||||||||||||    
T  9955019 gtcatttatgactatataccatttataacatatattcagtattattatttttttgtgtaaaatccatcgat 9954949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 16446749 - 16446676
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattat-ttttgttttggtaaaatccatc 223  Q
    ||||||||||| ||||| ||||| |||| |||||||||| ||||  ||||| ||||||||| ||| ||||||||    
T  16446749 aactgagtcatatatgattatatgcaatttataacatatatttagtattatattttgtttttgtagaatccatc 16446676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 9352053 - 9351978
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||| ||||||||||| || |||||||||| ||||  |||| |||| ||| |||||||| ||||||||    
T  9352053 aactaagtcatttttgactatataccatttataacatatatttagtattaatttt-tttgggtaaaattcatcgatt 9351978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 25146759 - 25146684
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||| ||||||||||||||||||| |||||| ||| ||||  || | |||| ||| |||||||||||||||||    
T  25146759 aactaagttatttatgactatatacaatttataacgtatatttagtatcaatttt-tttgggtaaaatccatcgatt 25146684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 4156893 - 4157066
Alignment:
Q  52 aaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaacttt- 150  Q
    |||| ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||  || ||| ||||||||||||||||||||||||||||||     
T  4156893 aaattgtgaaatacatacaaaatcgcaagattttaaaggattttgaaggattttgtccat--tttttattcatttatgtataagtattttgtgaacttta 4156990  T
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||| || |||||||| |||||||||||| |||||||||| || | ||||||||||||||| ||||||||||||||||    
T  4156991 aaccgaatcatttatcactatatacaat-tataacatatattcaacattatttttgttttagtaaaatccatcgatt 4157066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 18459717 - 18459546
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattt 140  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||| ||| || ||||||||||||||||||||    
T  18459717 aaaatcgcacaaaatcgtgaaattcatacaaaattgcaggattttaaacggttttgaaggattttgtccatttttg-taatcatttatgtataagtattt 18459619  T
Q  141 tgtgaacttt-aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttgg 212  Q
    |||| ||||| ||| |||||||||||||||||||||| |  ||||||||| |||| | ||| |||||||||||    
T  18459618 tgtggactttaaaccgagtcatttatgactatatacagttcataacatatatttagcgttacttttgttttgg 18459546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 8011214 - 8011051
Alignment:
Q  63 ttcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaa-ctgagtcat 161  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||  || ||  || |||||||||||||||||||||||| ||||||| || | ||||    
T  8011214 ttcaaacaaaatcgcaggattttaaagggttttgaagaattttgtcatttctt--tattcatttatgtataagtattttgtggactttaaactaattcat 8011117  T
Q  162 ttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| | |||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  8011116 ttataattatatacaatttataacatatatttagcattatttttgttttggtaaaatacatcgatt 8011051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 7044851 - 7044977
Alignment:
Q  101 attttgtccattgttgttagtcatttatgtataagtattttgtgaactttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcatt 199  Q
    |||||||||||| || |||||||||||||||||||||| ||||  ||||||| ||||||||||||| |||||||||||  ||||||| ||||||| ||||    
T  7044851 attttgtccattttt-ttagtcatttatgtataagtatcttgtcgactttaaactgagtcatttatcactatatacaaattataacacatgtttaacatt 7044949  T
Q  200 atttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||||||||||||||||||    
T  7044950 atttttgttttggtaaaatccatcgatt 7044977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 7825044 - 7825239
Alignment:
Q  16 atcccaaaaaaggcagaatactagtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaa----gaa---ttttgt 107  Q
    ||||||||| ||||| ||| |||||||| | | | ||||||| |||||| |||||||||| |||||||||||||||||||||||    |||   ||||||    
T  7825044 atcccaaaataggcaaaatcctagtaaagttgcatcaaaatcttgaaatccatacaaaattgcaagattttaaagggttttgaattttgaacgattttgt 7825143  T
Q  108 ccattgttgttagtcatttatgtataagtattttgtgaacttt-aactgagtcatttatgactatatacaatatataacatatgtttatcattatt 202  Q
    |||||    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| | | |||| |||||||    
T  7825144 ccatttaatttagtcatttatgtataagtattttgtggactttaaactgagtcatttatgactatatacaatttataacttgtatttagcattatt 7825239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 7452540 - 7452720
Alignment:
Q  42 aaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtatttt 141  Q
    |||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||| |  ||||||| | || || ||||||| ||||||||| ||||    
T  7452540 aaatcgcacaaaatcgtgaaatacatacaaaattgcaggattttaaagggttttgaagga--ttgtccaatttttttggtcatttttgtataagtgtttt 7452637  T
Q  142 gt-gaactttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    || ||| || |||||||||||||    ||||||| ||| |||||||||| || | ||||||||||||||||  ||||||||||||||    
T  7452638 gtggaatttaaactgagtcattt----ctatatagaatttataacatatattaagcattatttttgttttgacaaaatccatcgatt 7452720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 6347087 - 6346992
Alignment:
Q  38 agtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataa 134  Q
    |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  6347087 agtaaaatcgcacaaaatcgtgaaattcacacaaaatcgcaggattttaaagggttttgaaggattttgtccatt-tttttagtcatttatgtataa 6346992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 7815641 - 7815819
Alignment:
Q  16 atcccaaaaaaggcagaatactagtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaa----gaa---ttttgt 107  Q
    ||||||||| ||||| ||| |||||||| | | | ||||||| |||||| |||||||||| |||||||||||||||||||||||    |||   ||||||    
T  7815641 atcccaaaataggcaaaatcctagtaaagttgcatcaaaatcttgaaatccatacaaaattgcaagattttaaagggttttgaattttgaacgattttgt 7815740  T
Q  108 ccattgttgttagtcatttatgtataagtattttgtgaactttaa-ctgagtcatttatgactatatacaatatataac 185  Q
    |||||    ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  7815741 ccatttaatttagtcatttatgtataagtattatgtggactttaaactgagtcatttatgactatatacaatttataac 7815819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 9149749 - 9149646
Alignment:
Q  117 ttagtcatttatgtataagtattttgtgaactttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||||| |||||||||| |||| |||||||||| |||||||||    
T  9149749 ttagtcatttatgtataagtattttttggactttaagctgagtcatttataactatatacaatttataacatatatttagcattatttttcttttggtaa 9149650  T
Q  216 aatc 219  Q
    ||||    
T  9149649 aatc 9149646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 7803125 - 7803261
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaa----gaa---ttttgtccattgttgttagtcatttatgtataagtattttg 142  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||    |||   |||||||||||    ||||||||||||||||||||||||||    
T  7803125 caaaatcttgaaatccatacaaaattgcaagattttaaagggttttgaattttgaacgattttgtccatttaatttagtcatttatgtataagtattttg 7803224  T
Q  143 tgaacttt-aactgagtcatttatgactatatacaat 178  Q
    || ||||| ||||||||||||||||||||||||||||    
T  7803225 tggactttaaactgagtcatttatgactatatacaat 7803261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 24719621 - 24719725
Alignment:
Q  36 ctagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataag 135  Q
    |||||||||||| || ||| |||||||| |||||||||||||| |||||||| ||| ||| ||||||| |||||||| || |||||||||||||||||||    
T  24719621 ctagtaaaatcgcacgaaaacgtgaaatacatacaaaatcgcaggattttaatgggcttttaagaattgtgtccattttttttagtcatttatgtataag 24719720  T
Q  136 tattt 140  Q
    |||||    
T  24719721 tattt 24719725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 10394629 - 10394825
Alignment:
Q  40 taaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtatt 139  Q
    |||||||| |||||||| | |||| ||| |||||||||| |||||||||| ||||||||| ||||  |||  | || ||| ||||||||||||||| |||    
T  10394629 taaaatcgcacaaaatcattaaatccattcaaaatcgcaggattttaaagagttttgaaggatttcttcctcttttattaatcatttatgtataagaatt 10394728  T
Q  140 ttgtgaacttt-aactgagtcatttat--------gactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||| ||| ||| |||||||||||        |   ||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||    
T  10394729 ttgtgaattttaaacggagtcatttatttttgggaggtaatatacaatttataacatatatttaccattatttttgttttggtaatatccatcgatt 10394825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 6346944 - 6346870
Alignment:
Q  153 ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  6346944 ctgagtcatttatgcatatatacaatttataacatatatttatcattatttttgttttggtgaaatccatcgatt 6346870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 55476082 - 55476183
Alignment:
Q  121 tcatttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaat 218  Q
    ||||||||||||| |||||||||| ||||| ||||  |||||||||||||||||| |||| |||||||||| |||  ||||||||||||||||||| |||    
T  55476082 tcatttatgtatatgtattttgtgtactttgaactttagtcatttatgactatatgcaatttataacatatattttgcattatttttgttttggtagaat 55476181  T
Q  219 cc 220  Q
    ||    
T  55476182 cc 55476183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 7045080 - 7045156
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||||| |||||||||||  |||||||||| |||| |||||||||||||||||||| |||||| ||||    
T  7045080 aactgagtcatttatcactatatacaaattataacatatatttaacattatttttgttttggtaagatccatagatt 7045156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 18403670 - 18403735
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    ||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||    
T  18403670 tgagtcattcatgactatatacaatttataacatatatttaacattatttttgttttggtagaatc 18403735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 24719722 - 24719789
Alignment:
Q  160 atttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||  ||||||||    
T  24719722 atttatgactatatacaatttataacatatatttaacattatttttgctttggtaaaactcatcgatt 24719789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 8409723 - 8409789
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    ||||||||||||||||||||  ||| |||||||||| |||| ||||||||||||||||||| |||||    
T  8409723 tgagtcatttatgactatatgtaatttataacatatatttagcattatttttgttttggtagaatcc 8409789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 5943298 - 5943162
Alignment:
Q  92 ttttgaagaattttgtccattgttgttagtcatttatgtata--agtattttgtgaactttaa-ctgagtcatttatgactatatacaatatataacat- 187  Q
    |||| ||||||||||||  || || ||| |||||||||||||  ||||||||||| ||||||| ||  |||||||||||||||| |  || ||||||||     
T  5943298 ttttaaagaattttgtcagttttt-ttactcatttatgtatataagtattttgtgcactttaaactttgtcatttatgactataaa--atttataacatt 5943202  T
Q  188 atgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    || |||| |||||||||| |||||||||||||||||||||    
T  5943201 atatttaacattatttttattttggtaaaatccatcgatt 5943162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 8743803 - 8743708
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttg 211  Q
    ||||||||||||| |||||||||||  |||||||    ||||||||||||||||||  ||||| || ||||||| |||| ||||||||||||||||    
T  8743803 agtcatttatgtacaagtattttgtagactttaaactttgagtcatttatgactatgaacaatttaaaacatatatttaacattatttttgttttg 8743708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 5846106 - 5846050
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgtttt 210  Q
    ||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||    
T  5846106 tgagtcatttatgacaatatacaatttataacatatatttagcattatttttgtttt 5846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 17466218 - 17466293
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  ||||||||| || | ||||||||||||||||    
T  17466218 aactaagtcatttatgactatataccatttataacatatatttaatattattttt-ttgttgtaaaatccatcgatt 17466293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 8020778 - 8020723
Alignment:
Q  165 tgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    ||||||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  8020778 tgactatatgcaatttataacatatatttaacattatttttgttttggtagaatcc 8020723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 5884277 - 5884212
Alignment:
Q  158 tcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    ||||||||||| |||| |||| |||||||||  |||| ||||| ||||||||| ||||||||||||    
T  5884277 tcatttatgacaatatgcaatttataacatacttttagcattacttttgtttttgtaaaatccatc 5884212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 5375803 - 5375879
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||||||||||||| |||||  || |||||||||| ||||  |||| |||| ||| |||||||||||||||||    
T  5375803 aactaagtcatttatgaccatatatcatttataacatatatttagtattaattttttttgggtaaaatccatcgatt 5375879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 9911401 - 9911326
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| || |  |||||| || |||||||||| ||||||||||    
T  9911401 aactaagtcatttatgactatataccatttataacatatattaagtattattatt-ttttggtaaagtccatcgatt 9911326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 36120968 - 36121037
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||| || ||||| |||| ||||  |||||| |  |||||||||||||||||||||    
T  36120968 agtcatttatgactatataccatttataaaatatatttagtattattat--ttttggtaaaatccatcgatt 36121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 10143043 - 10143110
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    |||||||||||||||||||| |  ||||| |||| ||||  ||||||||| ||||| |||||||||||    
T  10143043 agtcatttatgactatataccaattataatatatatttagtattattttttttttgataaaatccatc 10143110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 18327443 - 18327496
Alignment:
Q  32 aatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagatttt 85  Q
    |||||||  ||||||| |||||||| |||||||| | |||||||||||||||||    
T  18327443 aatactatcaaaatcgcacaaaatcttgaaattcgttcaaaatcgcaagatttt 18327496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 18437954 - 18437901
Alignment:
Q  32 aatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagatttt 85  Q
    |||||||  ||||||| |||||||| |||||||| | |||||||||||||||||    
T  18437954 aatactatcaaaatcgcacaaaatcttgaaattcgttcaaaatcgcaagatttt 18437901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 50 - 227
Target Start/End: Complemental strand, 43005953 - 43005774
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagta-ttttgtgaact 148  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||| || |||||||||||| | |||||| ||||||||| |    
T  43005953 caaaatcatgaaattcatacaaaatcgcaggatttttaagggttttgaaggattttgttcattttttttagtcatttatatttaagtatttttgtgaaat 43005854  T
Q  149 ttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||| |||||||| | |||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  43005853 ttaatctgagtgatttatgagtgtatacaatttataacatatatttagcattatttttgttttggtacaatccatcgatt 43005774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 24648065 - 24648231
Alignment:
Q  52 aaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaacttta 151  Q
    |||||||||||| ||||||||||||||||||||| ||||          ||||||||||||  | |||||||||||||||||||||||||||| ||||||    
T  24648065 aaatcgtgaaatccatacaaaatcgcaagattttgaagg----------attttgtccatttattttagtcatttatgtataagtattttgtggacttta 24648154  T
Q  152 act-gagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    | | |||||||||||||||||||||||| ||||| |||| |||| |||||||| |||||| |||||||||| |||||    
T  24648155 aattgagtcatttatgactatatacaatttataatatatatttagcattatttatgttttagtaaaatccaccgatt 24648231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 41427510 - 41427614
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||||| |||||||||| ||||| ||||   |||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||     
T  41427510 agtcatttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatgcaatttataatatatatttatcattatttttgttttggtag 41427609  T
Q  216 aatcc 220  Q
    |||||    
T  41427610 aatcc 41427614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 26021444 - 26021532
Alignment:
Q  137 attttgtgaactttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcg 224  Q
    |||||||  ||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||| |||||    
T  26021444 attttgtccactttaatctgagtcatttatgactatatacaatttataacatatatttagcattattattgttttggtaaaatgcatcg 26021532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 19377704 - 19377808
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||||| |||||||||| ||||| ||||   |||||||||||||||||| |||| |||||||||| |||| ||||||||||||||| |||     
T  19377704 agtcatttatgtatatgtattttgtggactttgaactttaagtcatttatgactatatccaatttataacatatatttaacattatttttgtttttgtag 19377803  T
Q  216 aatcc 220  Q
    |||||    
T  19377804 aatcc 19377808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 26021395 - 26021453
Alignment:
Q  52 aaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtcca 110  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||    
T  26021395 aaatcgtgacatccatacaaaatcgcaggattttaaagggttttgaaggattttgtcca 26021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 15446302 - 15446413
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||| ||||| |||||| |||||||    |||||||||||||| | | | ||||  ||||||||| |||||| |||||||||||||| ||     
T  15446302 agtcatttatgtacaagtaatttgtggactttaaactttgagtcatttatgagtgtgtgcaattgataacatatatttatcgttatttttgttttgatag 15446401  T
Q  216 aatccatcgatt 227  Q
    ||||||||||||    
T  15446402 aatccatcgatt 15446413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 30804032 - 30804124
Alignment:
Q  123 atttatgtataagtattttgt-gaactttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggta 214  Q
    ||||||||||||||||||||| ||| |  |||||||||||||||||||||||  |||  |||| | || |||| |||||||||||||||||||    
T  30804032 atttatgtataagtattttgtagaattgaaactgagtcatttatgactatatgtaattcataataaatatttagcattatttttgttttggta 30804124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 187909 - 187812
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggta 214  Q
    |||||||||||||||  ||||||||| ||||  ||||  ||| |||||| ||||||| |||| |||||||||| |||| |||||||||||||||||||    
T  187909 agtcatttatgtatatatattttgtggacttcgaactttagttatttattactatatgcaatttataacatatatttaacattatttttgttttggta 187812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 9996959 - 9996898
Alignment:
Q  166 gactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||  |||| |||||||||| || | ||||||||||||||||||||||||||||||||    
T  9996959 gactataagcaatttataacatatattaagcattatttttgttttggtaaaatccatcgatt 9996898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 22984839 - 22984751
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aact--gagtcatttatgactatatacaatatataacatatgtttatcattatttt 204  Q
    ||||||||||||||| |||||||||| | ||| ||||  ||||||| ||||||||||| |||| |||||||||| |||| |||||||||    
T  22984839 agtcatttatgtatatgtattttgtggaatttgaactttgagtcatctatgactatatgcaatttataacatatatttagcattatttt 22984751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 30799497 - 30799606
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactt-taactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaa 217  Q
    ||||||||||||||||||||||| |||||||  |||| ||||||||||||| ||| | ||| ||||||| || |||| |||| ||||   ||| ||| ||    
T  30799497 agtcatttatgtataagtattttatgaacttgaaactaagtcatttatgaccatacataatttataacaaatatttagcattgttttgaattttgtacaa 30799596  T
Q  218 tccatcgatt 227  Q
    ||||||||||    
T  30799597 tccatcgatt 30799606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 15052081 - 15052025
Alignment:
Q  164 atgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  15052081 atgactatatgcaatttataacatatatttaacattatttttgttttggtagaatcc 15052025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 19579081 - 19579157
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||| ||| ||  ||||||||| |||   ||||||||| |||||||||||||||||||||    
T  19579081 aactaagtcatttatgactatttaccattcataacatatatttggtattattttttttttggtaaaatccatcgatt 19579157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 13349558 - 13349509
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactt-taactgagtcatttatga 167  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  13349558 agtcatttatgtataagtattttgtggacttcaaactgagtcatttatga 13349509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 18843854 - 18843929
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||| ||||||| || |||||||||| ||||  |||| |||| ||| |||||||||||||||||    
T  18843854 aactaagtcatttatgattatataccatttataacatatatttagtattaatttt-tttgggtaaaatccatcgatt 18843929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 4289921 - 4289992
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccatt 112  Q
    ||||||| ||||||||||||||| | | |||||||||| |||||| | || |||||||| ||||||| ||||    
T  4289921 aaaatcgcacaaaatcgtgaaatccgttcaaaatcgcaggattttgatggattttgaaggattttgttcatt 4289992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 19979738 - 19979789
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatt 202  Q
    |||| |||||||||||||||||||| || |||||||||| ||||| ||||||    
T  19979738 aactaagtcatttatgactatataccatttataacatatatttattattatt 19979789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 29270235 - 29270303
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttta-actgagtcatttatgactatatacaatatataacat 187  Q
    |||||||||||||||||||||||||| ||||||   ||||| |||||||||||||| |||| || |||||    
T  29270235 agtcatttatgtataagtattttgtg-actttactttgagtaatttatgactatatgcaatttaaaacat 29270303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 20321081 - 20321157
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||||||||||||| |||||  || |||||||||| ||||  |||| |||| | | |||||||||||||||||    
T  20321081 aactaagtcatttatgaccatatatcatttataacatatatttaatattaattttttctgggtaaaatccatcgatt 20321157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 23172418 - 23172343
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || | |||||||| ||||  |||| |||| ||| |||||||| ||||||||    
T  23172418 aactaagtcatttatgactatataccatttgtaacatatatttaatattaatttt-tttgggtaaaattcatcgatt 23172343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 26565638 - 26565467
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactt 149  Q
    ||||||| ||||||||||||||||||  | ||||||||||||||| |||| ||||||||  |  || |||||||||||||||||||||||||||| ||||    
T  26565638 caaaatcatgaaattcatacaaaatcctaggattttaaagggtttggaagtattttgtc--tactttttagtcatttatgtataagtattttgtggactt 26565541  T
Q  150 t-aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    | |||||||||||||||||||||||||| | ||||||||||  ||| ||||||||||||||||||||||||||||    
T  26565540 taaactgagtcatttatgactatatacagtttataacatat-attaacattatttttgttttggtaaaatccatc 26565467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 21157775 - 21157598
Alignment:
Q  49 acaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaact 148  Q
    |||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||| | || | |||||||||||||||||||||||||  |||    
T  21157775 acaaaaccgtgaaattcatacaaaatcgcagaattttaaaggattttgaagaattttgtccagtttt-tgagtcatttatgtataagtattttgtagact 21157677  T
Q  149 ttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||  |||||||||| || ||||||| || |||||||||| |||| ||||| ||||||||||||| ||||||| ||||    
T  21157676 ttaaacgagtcatttacgattatataccatttataacatatatttagcattacttttgttttggtagaatccattgatt 21157598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 30294291 - 30294458
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactt 149  Q
    ||||||||||||||||||||||||||  |  ||||||||||||||||||  |||||||||||| || |||||||||||||||||| ||||||||| ||||    
T  30294291 caaaatcgtgaaattcatacaaaatcatagaattttaaagggttttgaaagattttgtccatt-tttttagtcatttatgtataactattttgtggactt 30294389  T
Q  150 ta-actgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcga 225  Q
    || |||| ||||||        |||||||| |||||||||| |||| |||||| |||||||||||||||||||||||    
T  30294390 tatactgggtcatt--------tatacaatttataacatatatttaacattatctttgttttggtaaaatccatcga 30294458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 1981360 - 1981257
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    ||||||||||||||| |||||||||| ||||| ||||  |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||| || |    
T  1981360 agtcatttatgtatatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttagcattatttttgttttgataga 1981261  T
Q  217 atcc 220  Q
    ||||    
T  1981260 atcc 1981257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 24915901 - 24915794
Alignment:
Q  44 atcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgt 143  Q
    ||||||||||||||| |||| || |||||| ||||   |||||||| |||| ||||||||||||||||| || ||| ||||||| |||||||||||||||    
T  24915901 atcgtacaaaatcgtaaaatccaaacaaaaacgcagagttttaaagagtttcgaagaattttgtccatt-tttttaatcatttacgtataagtattttgt 24915803  T
Q  144 gaactttaa 152  Q
    | |||||||    
T  24915802 ggactttaa 24915794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 25842765 - 25842665
Alignment:
Q  122 catttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    ||||||||| || |||||||||| ||||| ||||  |||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||| ||||    
T  25842765 catttatgtgtatgtattttgtggactttgaactttagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaatc 25842666  T
Q  220 c 220  Q
    |    
T  25842665 c 25842665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 17809151 - 17809050
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaa--ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    ||||||||||||||||||||||| | |  |||||  ||||||||||||||| ||||| |||| |||||||||| |||| ||||||||||||||||||| |    
T  17809151 agtcatttatgtataagtatttt-tcagatttaaaactgagtcatttatgattatatgcaatttataacatatatttagcattatttttgttttggtaga 17809053  T
Q  217 atc 219  Q
    |||    
T  17809052 atc 17809050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 23618463 - 23618363
Alignment:
Q  122 catttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    |||||||||||| |||||||||  ||||| ||||  |||||||||||||||||| |||| ||||| |||| |||| ||||||||||||||||||| ||||    
T  23618463 catttatgtatatgtattttgtagactttgaactttagtcatttatgactatatgcaatttataatatatatttaacattatttttgttttggtagaatc 23618364  T
Q  220 c 220  Q
    |    
T  23618363 c 23618363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 25842975 - 25842879
Alignment:
Q  17 tcccaaaaa-aggcagaatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccatt 112  Q
    ||||||||| ||||| ||| |||  ||||| | ||||||||||||||||||| ||||||||||||||||| | || |||||||| ||||||| ||||    
T  25842975 tcccaaaaacaggcaaaatcctacaaaaattgcacaaaatcgtgaaattcattcaaaatcgcaagattttgatggattttgaaggattttgttcatt 25842879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 5058668 - 5058743
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  |||||| || |||||||||| ||||||||||    
T  5058668 aactaagtcatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtccatcgatt 5058743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 8254096 - 8254040
Alignment:
Q  164 atgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  8254096 atgactatatgcaatttataacatatatttaacattatttttgttttggtagaatcc 8254040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 20570870 - 20570800
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||| || |||||||||| ||||  |||||| || |||||||||| ||||||||||    
T  20570870 agtcatttatgactatataccatttataacatatatttagtattattctt-ttttggtaaagtccatcgatt 20570800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 7307140 - 7307204
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    ||||||||||| |||||||| |||| |||| ||||| |||| ||||||||||||||||||| ||||    
T  7307140 tgagtcatttacgactatatgcaatttata-catatatttaacattatttttgttttggtagaatc 7307204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 4247495 - 4247570
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||  || | |||||||| ||||  ||||||||| ||| |||||||||||||||||    
T  4247495 aactaagtcatttatgactatatatcatttgtaacatatatttagtattattttt-tttaggtaaaatccatcgatt 4247570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 44944835 - 44944760
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  |||||| || |||||||||| || |||||||    
T  44944835 aactaagtcatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaagtctatcgatt 44944760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 8629761 - 8629662
Alignment:
Q  121 tcatttatgtataagtattttgtgaactttaactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaat 218  Q
    ||||||||||||| |||||||||| ||||| | |   ||  ||||||||||||   |||| |||||||||| |||| ||||||||||||||||||| |||    
T  8629761 tcatttatgtatatgtattttgtggactttgaatttaagatatttatgactatg--caatttataacatatatttagcattatttttgttttggtagaat 8629664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 24725467 - 24725387
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattat----ttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  |||||    |||| ||| |||||||||||||||||    
T  24725467 aactaagtcatttatgactatataccatttataacatatatttagtattattttattttttttgggtaaaatccatcgatt 24725387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 4574879 - 4574931
Alignment:
Q  175 caatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||| || | |||||||||| ||||||||||||| |||||||    
T  4574879 caatttataacatatattaagcattatttttattttggtaaaatctatcgatt 4574931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 8304218 - 8304281
Alignment:
Q  159 catttatgactatatacaatatataac--atatgtttatcattatttttgttttggtaaaatcc 220  Q
    ||||||||||||||| |||| ||||||  |||| ||||  |||||||||||||||||| |||||    
T  8304218 catttatgactatatgcaatttataacatatatttttaaaattatttttgttttggtagaatcc 8304281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 15761484 - 15761273
Alignment:
Q  16 atcccaaaaaaggcagaatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgtt 115  Q
    ||||||||| ||||| ||| ||||||||| | | ||||||| |||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| |     
T  15761484 atcccaaaataggcaaaattctagtaaaagcat-caaaatcatgaaatccatacaaagtcgaaagattttaaagggttttgaaggattttgtccatttta 15761386  T
Q  116 gttagtcatttatgtataagtattttgtgaacttt-aactgagtcatttatga--ctatatacaatatataacatatgtttatcattatttttgttttgg 212  Q
     |||||  | | ||||||| ||||||||||| ||| |||| | ||||||||||  ||||||||||| |||||||||| |||| |||||||||||||||||    
T  15761385 tttagt--tatgtgtataactattttgtgaattttaaacttactcatttatgactctatatacaatttataacatatatttagcattatttttgttttgg 15761288  T
Q  213 taaaatccatcgatt 227  Q
    |||||||||||||||    
T  15761287 taaaatccatcgatt 15761273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 8582121 - 8582257
Alignment:
Q  91 gttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaactgagtcatttatgactatatacaatatataacatatg 190  Q
    ||||||||| ||||||| |||| || ||| | |||||||||||| ||||||||| ||||||| |  || |||||| ||||  |||||| ||||||||||     
T  8582121 gttttgaaggattttgttcattttttttaataatttatgtataaatattttgtggactttaaatcggtaatttataactaattacaatgtataacatata 8582220  T
Q  191 tttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||| |||||||||||||| ||||||||    
T  8582221 tttaacattatttatgttttggtaaaattcatcgatt 8582257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 26575147 - 26575038
Alignment:
Q  121 tcatttatgtataagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaa 217  Q
    |||||||||||||||||||||||| |||||||    |||||||||||||| ||||| |||| || ||||||| |||| ||| | ||||||||||||| ||    
T  26575147 tcatttatgtataagtattttgtggactttaaactttgagtcatttatgattatattcaatttaaaacatatttttagcatcaattttgttttggtagaa 26575048  T
Q  218 tccatcgatt 227  Q
    ||||||||||    
T  26575047 tccatcgatt 26575038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 1018199 - 1018096
Alignment:
Q  125 ttatgtataagtattttgtgaactttaac-tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    |||||||||||||||||||  |||||||  || |||||||||||||||||| ||| |||||||||  |||| |||||||||| |||||||| |||| |||    
T  1018199 ttatgtataagtattttgttgactttaaagtgggtcatttatgactatatataatttataacatacatttaacattatttttattttggtagaatctatc 1018100  T
Q  224 gatt 227  Q
    ||||    
T  1018099 gatt 1018096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 16752119 - 16752208
Alignment:
Q  123 atttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgtttt 210  Q
    ||||||||||| ||||||| |||||||| ||||  | |||||||||||||||| |||| |||||||||| |||| |||||||||||||||    
T  16752119 atttatgtatatgtattttatgaactttgaactttactcatttatgactatatgcaatttataacatatatttaacattatttttgtttt 16752208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 40541858 - 40541761
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcatta-tttttgttttggt 213  Q
    ||||||||||||||| |||||||||| || || ||||  |||||||||||||||||| |||| |||||||||| |||| ||||| |||||||||||||    
T  40541858 agtcatttatgtatacgtattttgtgtaccttgaactttagtcatttatgactatatgcaatttataacatatatttaacattattttttgttttggt 40541761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 11879739 - 11879814
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||| |||||||||||||||| || |||||||||| ||||  |||||| || |||||||||||||||||||||    
T  11879739 aactaagtaatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgatt 11879814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 11897155 - 11897230
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||| |||||||||||||||| || |||||||||| ||||  |||||| || |||||||||||||||||||||    
T  11897155 aactaagtaatttatgactatataccatttataacatatatttagtattattatt-ttttggtaaaatccatcgatt 11897230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 17566213 - 17566280
Alignment:
Q  117 ttagtcatttatgtataagtattttgtgaacttt-aactgagtcatttatgactatatacaatatata 183  Q
    |||||||||||| ||| ||||||||||||||||| |||| || |||| ||||||||||||||| ||||    
T  17566213 ttagtcatttatctatgagtattttgtgaactttaaactaagccattaatgactatatacaatttata 17566280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 6810960 - 6811034
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||| ||||||||  || |||||||||| ||||  |||||||||  ||||||||||||||||||||    
T  6810960 aactaagtcatttataactatatatcatttataacatatatttagtattattttt--tttggtaaaatccatcgatt 6811034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 3094233 - 3094165
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  ||| ||||| |||| ||||||||    
T  3094233 aactaagtcatttatgactatataccatttataacatatatttagtattttttttttttttgtaaaatc 3094165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 23142319 - 23142388
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||| || |||||||||| ||||  |||||| |  |||||||||| ||||||||||    
T  23142319 agtcatttatgactatataccatttataacatatatttagtattattat--ttttggtaaagtccatcgatt 23142388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 29384300 - 29384227
Alignment:
Q  158 tcatttatgactatatacaatatataacatatgtttatcatta----tttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||| || |||||||||| ||||  ||||    ||||| |||||||||||||||||||||    
T  29384300 tcatttatgactatataccatttataacatatatttagtattagtatttttttttttggtaaaatccatcgatt 29384227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 24056578 - 24056523
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaatttt 105  Q
    ||||||||||||||||||||||||| ||| ||||||| | ||||| |||| |||||    
T  24056578 caaaatcgtgaaattcatacaaaattgcaggattttataaggtttcgaaggatttt 24056523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 45403173 - 45403244
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||  |||||| || |||||||||| ||||  |||||| || ||||||||||||| |||||||    
T  45403173 agtcatttatgataatataccatttataacatatatttaatattattatttttttggtaaaatctatcgatt 45403244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 2040274 - 2040314
Alignment:
Q  180 tataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||| |||| ||||||||||||||||||| |||||    
T  2040274 tataacatatatttaacattatttttgttttggtagaatcc 2040314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 5922194 - 5922265
Alignment:
Q  157 gtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgattag 229  Q
    ||||||||||||||||||| ||  ||||||||| ||||  ||||  ||| ||| |||||||||||||||||||    
T  5922194 gtcatttatgactatataccattcataacatatatttagtattaaattt-tttgggtaaaatccatcgattag 5922265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 27836454 - 27836379
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||| | ||||  ||| ||||| |  ||||||||||||||||||    
T  27836454 aactaagtcatttatgactatataccatttataacatgtatttagtatt-tttttttgctggtaaaatccatcgatt 27836379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 10872987 - 10872817
Alignment:
Q  20 caaaaaaggcagaatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgtta 119  Q
    ||||| ||||| ||| |||||||||||| |||||||| | |||| ||||||||||| |||||||||||| |||||||||| |||||||||||| || |||    
T  10872987 caaaataggcaaaatcctagtaaaatcgcacaaaatcttaaaatccatacaaaatcacaagattttaaaaggttttgaaggattttgtccatttttttta 10872888  T
Q  120 gtcatttatgtataagtattttgtgaacttt-aactgagtcatttatgactatatacaatatataacatat 189  Q
    ||||||||||| ||||||||||||| ||||| ||||  |||||||||||| | ||||||| ||||||||||    
T  10872887 gtcatttatgtttaagtattttgtggactttaaactatgtcatttatgacaaaatacaatttataacatat 10872817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 27676440 - 27676650
Alignment:
Q  16 atcccaaaaaaggcagaatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaa-gggttttgaagaattttgtccattgt 114  Q
    ||||||||| ||| | ||| |||||||||| | ||| ||||||||||| |||||||||   || || || ||| ||| ||| ||| |||||||||||| |    
T  27676440 atcccaaaataggtaaaatcctagtaaaatagcacagaatcgtgaaatccatacaaaaattcaggaattgaaaaggggttttaaggattttgtccatttt 27676539  T
Q  115 tgttagtcatttatgtataagtattttgtgaactttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggta 214  Q
    |  ||||||||||||||||||||||||||| | || ||| |||||||||||||||||||| ||| |||||||||| |||| |||| ||||||||||||||    
T  27676540 t--tagtcatttatgtataagtattttgtggatttaaaccgagtcatttatgactatatataatttataacatatatttaacattgtttttgttttggta 27676637  T
Q  215 aaatccatcgatt 227  Q
    |||||||| ||||    
T  27676638 aaatccattgatt 27676650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 17796593 - 17796742
Alignment:
Q  39 gtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagta 137  Q
    ||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||||| ||  |||||||| ||| || |||||||||||| |||||||     
T  17796593 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggtttttaatgattttgtctattttttttagtcatttatttataagtg 17796692  T
Q  138 ttttgtgaacttt-aactgagtcatttatgactatatacaatatataaca 186  Q
    ||||||||||||| |||  |||||||||| | |||||||||| |||||||    
T  17796693 ttttgtgaactttaaaccaagtcatttattaatatatacaatttataaca 17796742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 19105033 - 19105182
Alignment:
Q  39 gtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagta 137  Q
    ||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||||| ||  |||||||| ||| || |||||||||||| |||||||     
T  19105033 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggtttttaatgattttgtctattttttttagtcatttatttataagtg 19105132  T
Q  138 ttttgtgaacttt-aactgagtcatttatgactatatacaatatataaca 186  Q
    ||||||||||||| |||  |||||||||| | |||||||||| |||||||    
T  19105133 ttttgtgaactttaaaccaagtcatttattaatatatacaatttataaca 19105182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 24649686 - 24649598
Alignment:
Q  63 ttcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaa 152  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||    
T  24649686 ttcatacaatatcgcaggattttaaagggttttgaagaattttatccatt-tttttagtcatttatgtataagtattttgtgaactttaa 24649598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 337
Target Start/End: Original strand, 26129080 - 26129187
Alignment:
Q  225 attagtttaaaatttgattcttaggaatccaattcaatcgcatggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacata 324  Q
    |||||||||||| ||||||||||||||||||||     ||||| |||||| ||||||||||||||  | |||||||||||||||||||||||||||||||    
T  26129080 attagtttaaaacttgattcttaggaatccaat-----cgcattgaaaatagtgaataaaacacatgaaaacactacttgtttgaaaagttggttacata 26129174  T
Q  325 ctataaactcacc 337  Q
    | |||||||||||    
T  26129175 cgataaactcacc 26129187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 225 - 337
Target Start/End: Original strand, 26179136 - 26179243
Alignment:
Q  225 attagtttaaaatttgattcttaggaatccaattcaatcgcatggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacata 324  Q
    |||||||||||| ||||||||||||||||||||     ||||| |||||| ||||||||||||||  | ||||||||||||||||||||||||||| |||    
T  26179136 attagtttaaaacttgattcttaggaatccaat-----cgcattgaaaatagtgaataaaacacatgaaaacactacttgtttgaaaagttggttagata 26179230  T
Q  325 ctataaactcacc 337  Q
    | |||||||||||    
T  26179231 cgataaactcacc 26179243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 26205094 - 26205174
Alignment:
Q  259 caatcgcatggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacatactataaactcacctg 339  Q
    ||||||||||||||||  ||||||||| |||  |||||||||||||||||||||||||||||||||  |||||||||||||    
T  26205094 caatcgcatggaaaataatgaataaaaaacatgacaacactacttgtttgaaaagttggttacataagataaactcacctg 26205174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 15806551 - 15806407
Alignment:
Q  16 atcccaaaaaaggcagaatactagtaaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgtt 115  Q
    ||||||||| ||||| ||| |||||||||||| ||||||||||||||| |||||||||||||          ||| ||||||| ||||||||||||| ||    
T  15806551 atcccaaaacaggcaaaatcctagtaaaatcgcacaaaatcgtgaaatccatacaaaatcgc----------aggattttgaacaattttgtccattttt 15806462  T
Q  116 gttagtcatttatgtataagtattttgtgaacttt-aactgagtcatttatgact 169  Q
       | |||||||||||||||||||| ||| ||||| ||| |||||||||||||||    
T  15806461 tccaatcatttatgtataagtatttcgtggactttaaaccgagtcatttatgact 15806407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 8592397 - 8592333
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||    
T  8592397 agtcatttatgactatatgcaatttataacatatatttatcattatttttgttttggtagaatcc 8592333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 9169782 - 9169868
Alignment:
Q  135 gtattttgtgaacttt-aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||||||||| ||||   |||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  9169782 gtattttgtgaactttgaactttatcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtagaatcc 9169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 19348648 - 19348748
Alignment:
Q  122 catttatgtataagtattttgtgaactttaact--gagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    |||||||||||| ||||| |||| ||||| | |   |||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||| ||||    
T  19348648 catttatgtatatgtattatgtggactttgaattatagtcatttatgactatatgcaatttataacatatatttaacattatttttgttttggtataatc 19348747  T
Q  220 c 220  Q
    |    
T  19348748 c 19348748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 6861165 - 6861054
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaa-ct--gagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    |||||| ||||||||| | ||||||| ||||||| ||  || ||||||||||||||| ||||| ||||||||||  ||| | |||||||||||||||||     
T  6861165 agtcatatatgtataaatgttttgtgcactttaaacttcgaatcatttatgactatagacaatttataacatatagttagctttatttttgttttggtag 6861066  T
Q  216 aatccatcgatt 227  Q
    ||||||||||||    
T  6861065 aatccatcgatt 6861054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 26110811 - 26110891
Alignment:
Q  259 caatcgcatggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacatactataaactcacctg 339  Q
    |||| |||||||||||  ||||||||| |||  |||||||||||||||||||||||| ||||||||  |||||||||||||    
T  26110811 caattgcatggaaaataatgaataaaaaacatgacaacactacttgtttgaaaagtttgttacataagataaactcacctg 26110891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 26127784 - 26127879
Alignment:
Q  227 tagtttaaaatttgattcttaggaatccaattcaatcgcatggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacatact 326  Q
    |||||||||| ||||||| ||||||||||||     ||||||||||||  ||||||||  |||  |||||||||||||||||||||||||| ||||||||    
T  26127784 tagtttaaaacttgattcgtaggaatccaat-----cgcatggaaaataatgaataaataacatgacaacactacttgtttgaaaagttggctacatact 26127878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 26177834 - 26177929
Alignment:
Q  227 tagtttaaaatttgattcttaggaatccaattcaatcgcatggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacatact 326  Q
    |||||||||| ||||||| ||||||||||||     ||||||||||||  ||||||||  |||  |||||||||||||||||||||||||| ||||||||    
T  26177834 tagtttaaaacttgattcgtaggaatccaat-----cgcatggaaaataatgaataaataacatgacaacactacttgtttgaaaagttggctacatact 26177928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 22970903 - 22971004
Alignment:
Q  122 catttatgtataagtattttgtgaacttt-aactg-agtcattt-atgactatatacaatatataacatatgtttatcattatttttgttttggtaaaat 218  Q
    |||||||||||| |||||||||| ||||| ||||  |||||||| |||||||||| |||| |||||||||| | || ||||||||||||||||||| |||    
T  22970903 catttatgtatatgtattttgtggactttgaactttagtcattttatgactatatgcaatttataacatatatataacattatttttgttttggtagaat 22971002  T
Q  219 cc 220  Q
    ||    
T  22971003 cc 22971004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 26139784 - 26139829
Alignment:
Q  292 acaacactacttgtttgaaaagttggttacatactataaactcacc 337  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  26139784 acaacactacttgtttgaaaagttggttacatacgataaactcacc 26139829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 42696986 - 42697062
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| |||   ||| ||||| |||||||||||||||||||||    
T  42696986 aactaagtcatttatgactatataccatttataacatatatttggtatttttttttttttggtaaaatccatcgatt 42697062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 18014089 - 18014186
Alignment:
Q  123 atttatgtataagtattttgtgaacttt-aactg-agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    ||||||||||| |||||||||| ||||| ||||  ||||||||||||||||   |||| |||||||||| |||| |||||||||||||||| || |||||    
T  18014089 atttatgtatatgtattttgtggactttgaactttagtcatttatgactatg--caatttataacatatatttagcattatttttgttttgatagaatcc 18014186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 26233165 - 26233237
Alignment:
Q  267 tggaaaatggtgaataaaacacaatacaacactacttgtttgaaaagttggttacatactataaactcacctg 339  Q
    ||||||||  ||||||||| |||  | |||||||||||||||||||||| ||||||||  |||||||||||||    
T  26233165 tggaaaataatgaataaaaaacatgataacactacttgtttgaaaagtttgttacataagataaactcacctg 26233237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 28135923 - 28135967
Alignment:
Q  174 acaatatataacatatgtttatcattatttttgttttggtaaaat 218  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||    
T  28135923 acaatttataacatatgtttaacattatttttgttttggtaaaat 28135967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 28745915 - 28745990
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  |||| |||| ||| |||||||||||||||||    
T  28745915 aactaagtcatttatgactatatactatttataacatatatttactattaatttt-tttgggtaaaatccatcgatt 28745990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 39428041 - 39428117
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| |  |||||||||| ||||  |||| |||| ||| |||||||||||||||||    
T  39428041 aactaagtcatttatgactatatactacttataacatatatttagtattaattttttttgggtaaaatccatcgatt 39428117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 15515246 - 15515173
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  |||||||   |||||||||||||||| ||||    
T  15515246 aactaagtcatttatgactatataccatttataacatatatttagtattattt---ttttggtaaaatccatggatt 15515173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 15806352 - 15806302
Alignment:
Q  173 tacaatatataacatatgtttatcattatttttgttttggtaaaatccatc 223  Q
    |||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  15806352 tacaatttataacatatatttagcattatttttgttttggtagaatccatc 15806302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 28135816 - 28135907
Alignment:
Q  26 aggcagaatactagtaaaatcgta-caaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgt 117  Q
    ||||| ||| |||||||||||  | ||||||||| |||| |||||||||||| | |||||||||||| ||||||| ||||| |||||| ||||    
T  28135816 aggcaaaattctagtaaaatcacatcaaaatcgtaaaatccatacaaaatcgaaggattttaaaggg-tttgaaggattttatccatttttgt 28135907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 10591789 - 10591840
Alignment:
Q  169 tatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    ||||| |||| |||||||||| |||| ||||||||||||||||||| |||||    
T  10591789 tatatgcaatttataacatatatttagcattatttttgttttggtagaatcc 10591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 6136514 - 6136484
Alignment:
Q  197 attatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||||||||||||||    
T  6136514 attatttttgttttggtaaaatccatcgatt 6136484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 13286128 - 13286158
Alignment:
Q  197 attatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||||||||||||||    
T  13286128 attatttttgttttggtaaaatccatcgatt 13286158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 23649368 - 23649441
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||  | ||| |||| |||||||||| |||| ||||||||||| |||||| |||  ||||||||    
T  23649368 tgagtcatttatgtttttatgcaatttataacatatatttaacattatttttgctttggtgaaactcatcgatt 23649441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 26201939 - 26201984
Alignment:
Q  227 tagtttaaaatttgattcttaggaatccaattcaatcgcatggaaa 272  Q
    |||||||||| ||||||||||||||||||||  ||| |||||||||    
T  26201939 tagtttaaaacttgattcttaggaatccaatcgaatagcatggaaa 26201984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 3041200 - 3041244
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagatttt 85  Q
    ||||||| ||||||||||||||| ||| |||||||||| ||||||    
T  3041200 aaaatcgcacaaaatcgtgaaatccattcaaaatcgcaggatttt 3041244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 10872666 - 10872634
Alignment:
Q  191 tttatcattatttttgttttggtaaaatccatc 223  Q
    |||| ||||||||||||||||||||||||||||    
T  10872666 tttaacattatttttgttttggtaaaatccatc 10872634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 24263426 - 24263358
Alignment:
Q  36 ctagtaaaatcgtacaaaa-tcgtgaaattcatacaaaatcgcaagattttaaaggg-ttttgaagaat 102  Q
    |||||||||||| |||||| ||||||||| |||||||||| | | |||||| ||||| |||||||||||    
T  24263426 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaattgtaggatttttaagggattttgaagaat 24263358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 4841928 - 4841744
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattt 140  Q
    ||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||| || ||||||| |||| || ||||||||||||||||||  ||||    
T  4841928 aaaatcgcacaaaatcgtgagattcatacaagatcgcatgattttaaagggttttggaggattttgtgcatt-tttttagtcatttatgtataaacattt 4841830  T
Q  141 tgtgaacttt-aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    | || ||||| ||| |||| |||||||||  |||||||| |||||||||| |||  |||  |||||||||||||||||| ||||||||    
T  4841829 tatggactttaaaccgagtaatttatgac--tatacaatttataacatatattttgcatattttttgttttggtaaaatacatcgatt 4841744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 18490664 - 18490558
Alignment:
Q  118 tagtcatttatgtataagtattttgtgaacttta-actgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    |||||||||||||||| |||||||||| |||||| ||||||| |||||  ||||||||| || |||||||||| |||||||||||||||| ||||||| |    
T  18490664 tagtcatttatgtatatgtattttgtggactttatactgagttatttagcactatatacgatttataacatatatttatcattatttttgatttggtaga 18490565  T
Q  217 atccatc 223  Q
    |||||||    
T  18490564 atccatc 18490558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 3573969 - 3573866
Alignment:
Q  63 ttcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaactttaa-ctgagtcat 161  Q
    |||| ||||||| ||| ||| |||||||||||||||||||||| |||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||    
T  3573969 ttcaaacaaaattgcatgatgttaaagggttttgaagaattttttccatt-tttttagtcatttatgtttaagtattttgtggactttaatctgagtcat 3573871  T
Q  162 ttatg 166  Q
    |||||    
T  3573870 ttatg 3573866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 31407397 - 31407497
Alignment:
Q  117 ttagtcatttatgtataagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggt 213  Q
    |||||||||||||||||||||||||||| | |||||    ||||||||||||||| |||| |||| |||||||||| |||| ||||||||||||||||||    
T  31407397 ttagtcatttatgtataagtattttgtggaatttaaactttgagtcatttatgacaatatgcaatttataacatatatttaacattatttttgttttggt 31407496  T
Q  214 a 214  Q
    |    
T  31407497 a 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 33593189 - 33593078
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    |||||||||||||||||||||||||  |||| ||    ||||||| | |||||||||| |||| ||||||||||||||| |||||||||| ||||||||     
T  33593189 agtcatttatgtataagtattttgtagacttgaaactttgagtcaataatgactatatgcaatttataacatatgtttaacattatttttcttttggtag 33593090  T
Q  216 aatccatcgatt 227  Q
    ||||||||||||    
T  33593089 aatccatcgatt 33593078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 20400099 - 20400001
Alignment:
Q  132 taagtattttgtgaactttaac---tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||||||||||| |||||||    ||||| |||||||||||||| |||| |||||||||| |||||||||||||||||||||||  ||||||||||||    
T  20400099 taagtattttgtggactttaaacattgagttatttatgactatatgcaatttataacatatatttatcattatttttgttttggtggaatccatcgatt 20400001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 5422665 - 5422582
Alignment:
Q  136 tattttgtgaactttaactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    ||||||||| ||||||| |  |||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||    
T  5422665 tattttgtggactttaaattggtcatttatgactatatataatttataacatatatttagcattatttttgttttggtaaaatc 5422582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 7622006 - 7621902
Alignment:
Q  119 agtcatttatgtataagtattttgtgaactttaac----tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggta 214  Q
    ||||||||||||||||||||||| ||||||| ||     ||| |||||||||||||||  |||| ||||| |||| ||||||||||||||||||||||||    
T  7622006 agtcatttatgtataagtattttatgaacttgaaacttttgaatcatttatgactataggcaatttataatatatatttatcattatttttgttttggta 7621907  T
Q  215 aaatc 219  Q
     ||||    
T  7621906 gaatc 7621902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 18490886 - 18490784
Alignment:
Q  49 acaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtgaact 148  Q
    ||||||||||||||| ||||||||||   |  |||||||||  |||||||| ||||| |||||| || ||||||||||||||| ||||||||||||||||    
T  18490886 acaaaatcgtgaaatccatacaaaattttataattttaaagaattttgaaggattttatccattttt-ttagtcatttatgtacaagtattttgtgaact 18490788  T
Q  149 ttaa 152  Q
    ||||    
T  18490787 ttaa 18490784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 20432633 - 20432521
Alignment:
Q  117 ttagtcatttatgtataagtattttgtgaactttaa---ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggt 213  Q
    ||||||||||||||| |||||||||||| |||| ||    ||||| |||||||||||||| |||| ||||||||||  |||  |||||||||||||||||    
T  20432633 ttagtcatttatgtaaaagtattttgtggacttaaaattttgagttatttatgactatatgcaatttataacatat-attagtattatttttgttttggt 20432535  T
Q  214 aaaatccatcgatt 227  Q
      ||||||||||||    
T  20432534 ggaatccatcgatt 20432521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 23897950 - 23898025
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||||||||| ||||  ||| ||||| |||||||||||||||||||||    
T  23897950 aactaagtcatttatgactatataccatttataacatatatttagtatt-ttttttttttggtaaaatccatcgatt 23898025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 27890519 - 27890575
Alignment:
Q  158 tcatttatgactatatacaatatataacatatgtttatcattatttttgttttggta 214  Q
    |||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||    
T  27890519 tcatttatgactatatgcaatttataacatatatttagcattatttttgttttggta 27890575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 645415 - 645470
Alignment:
Q  154 tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttt 209  Q
    |||||||||||||||||||| |||| |||||||||| |||| ||||||| ||||||    
T  645415 tgagtcatttatgactatatgcaatttataacatatatttagcattattattgttt 645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 24209745 - 24209648
Alignment:
Q  122 catttatgtataagtattttgtgaactttaa---ctgagtcatttatgactatatacaata--tataacatatgtttatcattatttttgttttggta 214  Q
    ||||| |||||||||||||||||||||| ||    ||||| |||||||||||||| |||||  ||||||| || ||||  |||| |||||||||||||    
T  24209745 catttttgtataagtattttgtgaacttgaaattttgagttatttatgactatatgcaatatgtataacacatatttaatattaattttgttttggta 24209648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 26053286 - 26053211
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||| |||||||||||||||| || ||||||||||  |||  |||||| || |||||||||||||||||||||    
T  26053286 aactaagttatttatgactatataccatttataacatatagttagtattattatt-ttttggtaaaatccatcgatt 26053211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 26073339 - 26073264
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||| |||||||||||||||| || ||||||||||  |||  |||||| || |||||||||||||||||||||    
T  26073339 aactaagttatttatgactatataccatttataacatatagttagtattattatt-ttttggtaaaatccatcgatt 26073264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 7918333 - 7918265
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||||||||||||||||||  || |||||||||  ||||  |||||||   |||||||||||||||||||||    
T  7918333 agtcatttatgactatatatcatttataacataaatttagtattattt---ttttggtaaaatccatcgatt 7918265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 17250196 - 17250270
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| ||||||||||||||||||| ||| ||||| |||| ||||| | |||| || |||||||||||||||| ||||    
T  17250196 aactaagtcatttatgactatata-aatttataatatatatttattactattgtt-ttttggtaaaatccattgatt 17250270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 9015 - 8874
Alignment:
Q  86 aaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattttgtg-aactttaactgagtcatttatgactatatacaatatataa 184  Q
    |||||||||||||| |  ||||||||| || |||||||||||  |||||||||| |||| || || |||||||||||||||||||||||||||  |||||    
T  9015 aaagggttttgaaggaggttgtccattttt-ttagtcatttacatataagtattgtgtggaaattaaactgagtcatttatgactatatacaacttataa 8917  T
Q  185 catatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    ||||| |||| |||||| |||||||||||||||||||||||||    
T  8916 catatatttagcattatctttgttttggtaaaatccatcgatt 8874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 48798 - 48688
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgtataagtattt 140  Q
    ||||||| |||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||||| |||| ||  ||||||||||||||||| |||||    
T  48798 aaaatcgcacaaaaacgtgaaattcatacaaaaccgcatgattttaatgggttttgaaggattttgttcatt-tttctagtcatttatgtataattattt 48700  T
Q  141 tgtgaactttaa 152  Q
    |||| |||||||    
T  48699 tgtggactttaa 48688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 61392 - 61304
Alignment:
Q  41 aaaatcgtacaaaatcgtgaaattcatacaaaatcgcaagattttaaagggttttgaagaattttgtccattgttgttagtcatttatgt 130  Q
    ||||||| |||||| |||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||| ||  |||||||||||||    
T  61392 aaaatcgcacaaaaacgtgaaattcatacaaaaccgcaggattttaatgggttttgaaggattttgtccatt-tttctagtcatttatgt 61304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 35014 - 34904
Alignment:
Q  118 tagtcatttatgtataagtattttgtgaactttaa-ctgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    ||||||||||||||||| ||||||||| ||||||| ||||| ||||||||| ||| || |||||||||||||| | || ||||||||||||||| |||||    
T  35014 tagtcatttatgtataaatattttgtggactttaaactgagccatttatgattatgtataatatataacatatatgtagcattatttttgtttttgtaaa 34915  T
Q  217 atccatcgatt 227  Q
    |||||| ||||    
T  34914 atccattgatt 34904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 426 - 530
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aact--gagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaa 215  Q
    ||||||||||||||| | |||||||| ||||| ||||  ||||||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||||     
T  426 agtcatttatgtatatgcattttgtgcactttgaactttgagtcatttatgactatatgcaatttatatcatatatttagcattatttttgttttggtag 525  T
Q  216 aatcc 220  Q
    |||||    
T  526 aatcc 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 38565 - 38475
Alignment:
Q  123 atttatgtataagtattttgtgaacttt-aactg--agtcatttatgactatatacaatatataacatatgtttatcattatttttgtttt 210  Q
    ||||||||||| |||||||||| ||||| ||||   |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  38565 atttatgtatatgtattttgtggactttgaactttaagtcctttatgactatatacaatttataacatatatttatcattatttttgtttt 38475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 76308 - 76257
Alignment:
Q  159 catttatgactatatacaatatataacatatgtttatcattatttttgtttt 210  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  76308 catttatgactatatacaatttataacatatatttatcattatttttgtttt 76257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 133149 - 133049
Alignment:
Q  122 catttatgtataagtattttgtgaacttt-aac-tgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatc 219  Q
    |||||||||||| |||||||||| ||||| ||| |  ||||||||||||||||| |||| |||||||||| |||| ||||| ||||||||| ||| ||||    
T  133149 catttatgtatatgtattttgtggactttgaactttggtcatttatgactatatgcaatttataacatatatttaacattaattttgttttagtagaatc 133050  T
Q  220 c 220  Q
    |    
T  133049 c 133049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 5249 - 5146
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aactgag-tcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaa 216  Q
    ||||||||||||| | |||||||||| ||||| ||||  | ||||||||||||| || |||| |||||||||| |||| ||||||||||  ||||||| |    
T  5249 agtcatttatgtacatgtattttgtggactttgaactttgatcatttatgactacatgcaatttataacatatatttagcattatttttcatttggtaga 5150  T
Q  217 atcc 220  Q
    ||||    
T  5149 atcc 5146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 785 - 852
Alignment:
Q  117 ttagtcatttatgtataagtattttgtgaacttt-aactgagtcatttatgactatatacaatatata 183  Q
    |||||||||||| ||| ||||||||||||||||| |||| || |||| ||||||||||||||| ||||    
T  785 ttagtcatttatctatgagtattttgtgaactttaaactaagccattaatgactatatacaatttata 852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 8582 - 8655
Alignment:
Q  151 aactgagtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatccatcgatt 227  Q
    |||| |||||||||||||||||||| || |||| ||||| ||||  |||||||   |||||||||||||||||||||    
T  8582 aactaagtcatttatgactatataccatttataccatatatttagtattattt---ttttggtaaaatccatcgatt 8655  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 142722 - 142810
Alignment:
Q  119 agtcatttatgtataagtattttgtgaacttt-aac--tgagtcatttatgactatatacaatatataacatatgtttatcattatttt 204  Q
    ||||||||||||||| ||||||| || ||||| |||  ||| |||||| ||||||||| |||| |||||||||| |||| |||||||||    
T  142722 agtcatttatgtatatgtattttttggactttgaactttgaatcatttttgactatatgcaatttataacatatatttagcattatttt 142810  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 37103 - 37057
Alignment:
Q  129 gtataagtattttgtgaactttaa-ctgagtcatttatgactatata 174  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||||    
T  37103 gtataagtattttgtgtactttaaacggagtcatttatgactatata 37057  T

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Target: scaffold0526 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 8288 - 8351
Alignment:
Q  156 agtcatttatgactatatacaatatataacatatgtttatcattatttttgttttggtaaaatcc 220  Q
    |||||||||||||||||| |||| ||| |||||| ||||  ||||| |||||||||||| |||||    
T  8288 agtcatttatgactatatgcaatttat-acatatatttagtattatatttgttttggtagaatcc 8351  T

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Target: scaffold0259 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 18165 - 18205
Alignment:
Q  50 caaaatcgtgaaattcatacaaaatcgcaagattttaaagg 90  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  18165 caaaatcgtgaaatccatgcaaaatcgcaagattttgaagg 18205  T

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