View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16317_high_14 (Length: 332)
Name: NF16317_high_14
Description: NF16317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16317_high_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 14545661 - 14545978
Alignment:
| Q |
16 |
atcaaaaaacagaaccacactgttaaaccaaattgcaccaaaaacaactgaactgaaccaaactgctttagttcaactcgtaaactgtcggccacaattt |
115 |
Q |
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| T |
14545661 |
atcaaaaaacagaaccacactgttaaaccaaactgcaccaaaaacaactgaagtgaaccaaactgctttagttcaactcgtaaactgtcggccacaattt |
14545760 |
T |
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| Q |
116 |
ggnnnnnnnaacaaccctaattataaagacaaaaataaaagaagttgagggttcaatctttacttccagcatagtactaacaattactagctgtaacatt |
215 |
Q |
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| T |
14545761 |
ggtttttttaacaaccctaattataacgacaaaaataaaagaagttgagggttcaatctttacttccagcacagtactaacaattactagctgtaacatt |
14545860 |
T |
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| Q |
216 |
aaccataacattgaccgtttcaaatgaaat-nnnnnnnntaaaggctatatagtcaatgtgcaagctttgcttaaattctagtaggttacatgttgcaaa |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14545861 |
aaccataacattgaccgtttcaaatgaaataaacaaaaataaaggctatatagtcaatgtgcaagctttgcttaaattctagtaggttacatgttgcaaa |
14545960 |
T |
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| Q |
315 |
agtagtatagcttatgac |
332 |
Q |
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|||||||||||||||||| |
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| T |
14545961 |
agtagtatagcttatgac |
14545978 |
T |
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