View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16317_high_16 (Length: 318)
Name: NF16317_high_16
Description: NF16317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16317_high_16 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 128 - 318
Target Start/End: Original strand, 6729294 - 6729484
Alignment:
| Q |
128 |
atagagcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgcgaaagaggtacggtaaggggggtagtgtgatgaagtgataacagt |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6729294 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgtgaaagaggtacggtaaggggggtagtgtgatgaagtgataacggt |
6729393 |
T |
|
| Q |
228 |
gtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgggttagaggtagtg |
318 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6729394 |
gtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgggttagaggtagtg |
6729484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 6729200 - 6729282
Alignment:
| Q |
16 |
atggtggtgtttggtacttgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaacggcgagactgaaa |
98 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
6729200 |
atggtggtgtttggtacgtgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaatggcgaaactgaaa |
6729282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University