View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16318_low_1 (Length: 291)
Name: NF16318_low_1
Description: NF16318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16318_low_1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 40185968 - 40186247
Alignment:
| Q |
12 |
tcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40185968 |
tcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccct |
40186067 |
T |
|
| Q |
112 |
gaaaaataaatccaaacctggctcatcgctttcagcgatgctctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40186068 |
gaaaaataaatccaaacctggctcatcgctttcagcgatgttctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgc |
40186167 |
T |
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| Q |
212 |
tcatgaagcccctcgatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgacc |
291 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40186168 |
tcatgaagcccgtccatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgacc |
40186247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 43435841 - 43435555
Alignment:
| Q |
12 |
tcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccct |
111 |
Q |
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||||||||||||||||||||||| |||||| || | ||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
43435841 |
tcatcaaatttcccagcacttgtcaaagacctatgaataccatcatagactgccttggaaagagtataccc--tgatgactcgaatttcttagctaccct |
43435744 |
T |
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| Q |
112 |
gaaaaataaatccaaacctggctcatcgctttcagcgatgctctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgc |
211 |
Q |
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||||| |||||||||| |||| ||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
43435743 |
gaaaactaaatccaaattcggcttatcgcttgcagagatgctctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgc |
43435644 |
T |
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| Q |
212 |
tcatgaagc---------ccctcgatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgacc |
291 |
Q |
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|||| |||| |||| |||||| |||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
43435643 |
tcataaagcttgacagcatcctccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgacc |
43435555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 43444035 - 43443749
Alignment:
| Q |
12 |
tcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccct |
111 |
Q |
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|
||||||||||||||||||||||| |||||| || | ||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
43444035 |
tcatcaaatttcccagcacttgtcaaagacctatgaataccatcatagactgccttggaaagagtataccc--tgatgactcgaatttcttagctaccct |
43443938 |
T |
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| Q |
112 |
gaaaaataaatccaaacctggctcatcgctttcagcgatgctctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgc |
211 |
Q |
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||||| |||||||||| |||| ||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
43443937 |
gaaaactaaatccaaattcggcttatcgcttgcagagatgctctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgc |
43443838 |
T |
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| Q |
212 |
tcatgaagc---------ccctcgatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgacc |
291 |
Q |
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|||| |||| |||| |||||| |||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
43443837 |
tcataaagcttgacagcatcctccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgacc |
43443749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 43427336 - 43427050
Alignment:
| Q |
12 |
tcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccct |
111 |
Q |
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|
||||||||||||||||||| ||| |||||| || | ||||||||||||||| |||||||||||||||| |||||| ||||| ||||| |||| |||||| |
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| T |
43427336 |
tcatcaaatttcccagcacctgtcaaagacctatgaataccatcatagactgccttggaaagagtata--ccctgttgactcaaatttcttagttaccct |
43427239 |
T |
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| Q |
112 |
gaaaaataaatccaaacctggctcatcgctttcagcgatgctctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgc |
211 |
Q |
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||||| |||||||||| |||||| ||| || || | |||||||||||||| |||||| ||| || ||| ||||| ||||||||||||||||||||| |
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| T |
43427238 |
gaaaactaaatccaaatctggcttatcctttgtagataggctctttaaaagcacaatgcaatccggagctgtaggcttatatgaactatccatcatatgc |
43427139 |
T |
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| Q |
212 |
tcatgaagc---------ccctcgatcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgacc |
291 |
Q |
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|| | |||| |||| ||||||||||| | | ||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
43427138 |
tcgtaaagcttgacactgtcctccatcatcctattatttagaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgacc |
43427050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 21304 - 21098
Alignment:
| Q |
12 |
tcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaaagagtataccccctgtcgactcgaatttgttagctaccct |
111 |
Q |
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||||||||||||| ||||||||| |||||| || | ||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||| |
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| T |
21304 |
tcatcaaatttccgagcacttgtcaaagacctatgaataccatcatagactgccttggaaagagtataccc--tgtttactcgaatttcttagctaccct |
21207 |
T |
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| Q |
112 |
gaaaaataaatccaaacctggctcatcgctttcagcgatgctctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgc |
211 |
Q |
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||||| |||||||||| | ||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
21206 |
gaaaactaaatccaaatccagcttatcgcttgcagatgtgctctttaaaagcataatgcaatccagaactgatggcttatatgaactatccatcatatgc |
21107 |
T |
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| Q |
212 |
tcatgaagc |
220 |
Q |
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|||| |||| |
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| T |
21106 |
tcataaagc |
21098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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