View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16319_low_1 (Length: 659)
Name: NF16319_low_1
Description: NF16319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16319_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Original strand, 2925919 - 2926552
Alignment:
| Q |
18 |
ccattagctactttcaccctatcttgccagcaaagaggtttacgagagtattctgcatcataattgtattcaaagtgagtatcaccttattgtaaattta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925919 |
ccattagctactttcaccctatcttgccagcaaagaggtttacgagagtattctgcatcataattgtattcaaagtgagtatcaccttattgtaaattta |
2926018 |
T |
|
| Q |
118 |
gactctaaagtaaacataaataaagggttttgaggtatctggcatcgcagccgcattttcctgcaatttgttgtttgcaaggtaaaagcataatcaggag |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926019 |
gactctaaagtaaacagaaataaagggttttgaggtatctggcatcgcagccgcattttcctgcaatttgttgtttgcaaggtaaaagcataatcaggag |
2926118 |
T |
|
| Q |
218 |
atgcattaactaatatatttgctaaagttttattttgatataccatacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926119 |
atgcattaactaatatatttgctaaagttttattttgatataccatacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaag |
2926218 |
T |
|
| Q |
318 |
cctatggtttccttcagaacatgatccaagcaacatgacaatattttcatgtcttgctgtgcttaatgcatcaacttcagacttaaactccttttcttgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926219 |
cctatggtttccttcagaacatgatccaagcaacatgacaatattttcatgtcttgctgtgcttaatgcatcaacttcagacttaaactccttttcttgt |
2926318 |
T |
|
| Q |
418 |
ttgtgacttgcatgaatacattgtttaacagcaatcttgtatccaagaatctctcctttgtagacagaaccaaatccaccttctgatagaaagttctttg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926319 |
ttgtgacttgcatgaatacattgtttaacagcaatcttgtatccaagaatctctcctttgtagacagaaccaaatccaccttctgatagaaagttctttg |
2926418 |
T |
|
| Q |
518 |
cagaaaatccttgtgttgctgcatataattcagcatatgtgaactcnnnnnnngtccaatcaagttttggtctcttgttgtagcacattgaacaaacaga |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2926419 |
cagaaaatccttgtgttgctgcatataattcagcatatgtgaactctttttttgtccaatcaagttttggtctcttgttgtagcacattgagcaaacaga |
2926518 |
T |
|
| Q |
618 |
tttctctgatgtttgttcaactatttgatgatgt |
651 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
2926519 |
tttctccgatgtttgttcaactatttgatgatgt |
2926552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 267 - 533
Target Start/End: Original strand, 2971061 - 2971327
Alignment:
| Q |
267 |
tgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaagcaacatgacaatattttca |
366 |
Q |
| |
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||||| |||||| || ||||| |||||||||||||| |||||||||||||| | || |||||||| |||||||| || | | |||||||| ||| ||| |
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| T |
2971061 |
tgatagatgttgatcaagtgagccattgcagacatactcataaacaagaagtcgattatttccttctgaacatgaacctaaaagcatgacaacattctca |
2971160 |
T |
|
| Q |
367 |
tgtcttgctgtgcttaatgcatcaacttcagacttaaactccttttcttgtttgtgacttgcatgaatacattgtttaacagcaatcttgtatccaagaa |
466 |
Q |
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| T |
2971161 |
tgtcttgcttttctaagtacattaacttcagacctaaattccttctctccttggaagcttgcacttttatgttgcttaacagcaattgtcattccattaa |
2971260 |
T |
|
| Q |
467 |
tctctcctttgtagacagaaccaaatccaccttctgatagaaagttctttgcagaaaatccttgtgt |
533 |
Q |
| |
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| ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
2971261 |
cttgtcctttgtagacagatccaaacccaccttctgacagaaagttcttggcagaaaatccttgtgt |
2971327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 16329895 - 16329760
Alignment:
| Q |
263 |
tacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaagcaacatgacaatatt |
362 |
Q |
| |
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|||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||| || | ||||| || ||||| ||||| |||| |||||| | ||| |
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| T |
16329895 |
tacgcgataaatgttgatcaagtgagccattgcaaacaaattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacatt |
16329796 |
T |
|
| Q |
363 |
ttcatgtcttgctgtgcttaatgcatcaacttcaga |
398 |
Q |
| |
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||||||| ||||| || | | ||||| ||||||||| |
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| T |
16329795 |
ttcatgtattgctttgttgagtgcattaacttcaga |
16329760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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