View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16319_low_5 (Length: 273)
Name: NF16319_low_5
Description: NF16319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16319_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4241172 - 4241426
Alignment:
| Q |
8 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4241172 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggctaaggttccatccaatagaatacatcttattctacaccctcccaaa |
4241271 |
T |
|
| Q |
108 |
ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4241272 |
ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
4241371 |
T |
|
| Q |
208 |
atcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4241372 |
atcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatg |
4241426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 4250424 - 4250620
Alignment:
| Q |
20 |
aaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcaga |
119 |
Q |
| |
|
|||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||||| ||||| | || ||||||||||||||||||||||||||| | |
|
|
| T |
4250424 |
aaaccacctcaatccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcaca |
4250523 |
T |
|
| Q |
120 |
cacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
| |||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
4250524 |
cccttctttcttctttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttgg |
4250620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 4195635 - 4195843
Alignment:
| Q |
8 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa |
107 |
Q |
| |
|
||||||||| ||||| ||| ||| | |||| |||| || |||||||||||||||||||||||||| ||||| | || ||||||||||||||||| |
|
|
| T |
4195635 |
catcatcaacccaaaaaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaa |
4195734 |
T |
|
| Q |
108 |
ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
207 |
Q |
| |
|
|||||| ||| ||||||| ||||| || |||| | ||||||||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4195735 |
ttcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaa |
4195834 |
T |
|
| Q |
208 |
atcgtttgg |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
4195835 |
atcgtttgg |
4195843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4188746 - 4189000
Alignment:
| Q |
8 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa |
107 |
Q |
| |
|
||||||||| |||||| || |||| || ||||||| ||||||||||||||| | | ||||||||| |||||| ||||| || |||||||||||||| |
|
|
| T |
4188746 |
catcatcaacccaaactacaacaattcctttcactttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacaccctcccaaa |
4188845 |
T |
|
| Q |
108 |
ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
207 |
Q |
| |
|
|||||||||| || |||| ||||||||||||| | | ||||||| ||| | ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
4188846 |
ttcacaatcacacccttctttcttctttcaaaaactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttagctggtaaa |
4188945 |
T |
|
| Q |
208 |
atcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatg |
262 |
Q |
| |
|
|| |||||| | ||||| ||| | |||||||| || |||||| ||||||||| |
|
|
| T |
4188946 |
attgtttggccatcagaatctcaacaaccaaaaatccagtacacaacaaatgatg |
4189000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 4233425 - 4233638
Alignment:
| Q |
49 |
gacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttc |
148 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| | || |||||| |||||||||||||||| ||| || |||| |||||||| | | |||||| |
|
|
| T |
4233425 |
gacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctcccaaattcacattcacacccttctttcttcttcaagaagcttgttc |
4233524 |
T |
|
| Q |
149 |
caaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgggattttgaatcacaaaacccaaaaatacaata |
248 |
Q |
| |
|
||| ||| ||||||||||| ||||| |||||| | ||||||| |||||||| ||||||||||||||| ||| ||||| ||| | |||| ||| ||||| |
|
|
| T |
4233525 |
caattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggtaacatcgtttggcctttagaatctcaagaaccaataatccaata |
4233624 |
T |
|
| Q |
249 |
cacaccaaatgatg |
262 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4233625 |
tactccaaatgatg |
4233638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 4102418 - 4102543
Alignment:
| Q |
91 |
ttctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc |
190 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | ||| ||| ||| |||||||||| || |||| |||||| ||||| ||||||||| |||| | |
|
|
| T |
4102418 |
ttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttcc |
4102517 |
T |
|
| Q |
191 |
ttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
| |||||||| ||||||||||||||| |
|
|
| T |
4102518 |
tccctttagctggtaacatcgtttgg |
4102543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 4121860 - 4122020
Alignment:
| Q |
56 |
tttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatct |
155 |
Q |
| |
|
||||||| ||||| |||||| | ||| ||||| ||||||||||||||||||||||||||| || |||| ||||| || ||| |||||||||| || |
|
|
| T |
4121860 |
tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact |
4121959 |
T |
|
| Q |
156 |
taaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
||||||||||| ||||| ||||||||| | || | |||||||| ||||||||||||||| |
|
|
| T |
4121960 |
caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttgg |
4122020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 4191969 - 4192084
Alignment:
| Q |
91 |
ttctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc |
190 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||| |||||||| |||| ||||| ||| ||| |||||||||| ||||| |||||| ||||||||| |
|
|
| T |
4191969 |
ttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttc |
4192068 |
T |
|
| Q |
191 |
ttcctttagccggtaa |
206 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
4192069 |
tccctttagctggtaa |
4192084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 4094870 - 4094995
Alignment:
| Q |
91 |
ttctacaccctcccaaattcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc |
190 |
Q |
| |
|
|||||||||||||||| |||||| ||| || || | || ||||| ||| |||||||||| || ||||||||||| ||||| || || |||||||| | |
|
|
| T |
4094870 |
ttctacaccctcccaagttcacactcacaccctacttttttcttcgaaaatcttgttccaaaactcaaatcttcactctctttaactctacaacacttcc |
4094969 |
T |
|
| Q |
191 |
ttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
| |||||||| ||||||||||||||| |
|
|
| T |
4094970 |
tccctttagctggtaacatcgtttgg |
4094995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 4101028 - 4101077
Alignment:
| Q |
68 |
tccatccaatagaatacatcttattctacaccctcccaaattcacaatca |
117 |
Q |
| |
|
|||||||| |||||| |||||| || |||||||||||||| ||||||||| |
|
|
| T |
4101028 |
tccatccagtagaatgcatctttttgtacaccctcccaaaatcacaatca |
4101077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University