View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16319_low_6 (Length: 249)

Name: NF16319_low_6
Description: NF16319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16319_low_6
NF16319_low_6
[»] chr5 (3 HSPs)
chr5 (1-232)||(32013158-32013389)
chr5 (1-232)||(31793036-31793267)
chr5 (1-221)||(32024578-32024798)
[»] chr3 (5 HSPs)
chr3 (2-221)||(48132058-48132277)
chr3 (1-221)||(48113153-48113373)
chr3 (110-221)||(48141585-48141696)
chr3 (101-143)||(43871884-43871926)
chr3 (1-62)||(48141744-48141805)
[»] chr8 (3 HSPs)
chr8 (113-221)||(25242616-25242724)
chr8 (110-221)||(25254157-25254268)
chr8 (1-62)||(25254316-25254377)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 32013389 - 32013158
Alignment:
Q  1 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttcc 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  32013389 tcacaattatgccttcattttgtttgaaaccatctaactcaacaagcaactgatttaaagtcaacttcgtgtacatttggtcatttgaatttggttttcc 32013290  T
Q  101 accaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatc 200  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  32013289 accaatagcatcaatctcatcaagaaagattatacaaggcgcacgcttttttgcagcagcaaaaagatttctcaccctttgtgcaccaacaccaacaatc 32013190  T
Q  201 gtctcttcaaattcacgtccattacttgagaa 232  Q
    |||||||||||||||||||||||  |||||||    
T  32013189 gtctcttcaaattcacgtccattggttgagaa 32013158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 31793267 - 31793036
Alignment:
Q  1 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttcc 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||| ||||| ||||||    
T  31793267 tcacaattatgccttcattttgttcgagtccatctaactcaacaagcatttgatataaagtcaacttcgagtacatttggtaatttggatttggttttcc 31793168  T
Q  101 accaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatc 200  Q
    ||||||| |||||||||||||||||||||||||| || | ||||  ||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  31793167 accaatagcatcaatctcatcaataaagattatacaatgtgcacgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaacaatc 31793068  T
Q  201 gtctcttcaaattcacgtccattacttgagaa 232  Q
    | ||||||||||||||||||||||||||||||    
T  31793067 gcctcttcaaattcacgtccattacttgagaa 31793036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32024798 - 32024578
Alignment:
Q  1 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||  ||||||    
T  32024798 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcatgtacatttggtcgtttgaatttagttttcc 32024699  T
Q  101 accaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatc 200  Q
    |||||   |||||||||||||||||||||||||| |||||   |  ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |    
T  32024698 accaaacgcatcaatctcatcaataaagattatacaaggcaaccgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaacaacc 32024599  T
Q  201 gtctcttcaaattcacgtcca 221  Q
     ||||||||||||||||||||    
T  32024598 atctcttcaaattcacgtcca 32024578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 48132058 - 48132277
Alignment:
Q  2 cacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttcca 101  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||  |||  |||||||    
T  48132058 cacaattatgccttcattttgtttgaatccatctaactcaacaagcatttgatttaaagtcatcttcatgtacatttggtcttttgcgtttcgttttcca 48132157  T
Q  102 ccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcg 201  Q
    |||||| |||||||||||||||||||||||||| |||| |  | |||||||||||| ||||||||||||| ||||||  |||||||||||||||||| |     
T  48132158 ccaatagcatcaatctcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaacaaaca 48132257  T
Q  202 tctcttcaaattcacgtcca 221  Q
    ||||||||||||||| ||||    
T  48132258 tctcttcaaattcacttcca 48132277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48113153 - 48113373
Alignment:
Q  1 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttcc 100  Q
    ||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||| |||| ||||||| || || |||| ||||  ||||||    
T  48113153 tcacaattatgccatcgttttgtttgaaaccatctaactcaacaagcatttgatttaaagtcatcttcatgtacatttgatcctttgcatttcgttttcc 48113252  T
Q  101 accaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatc 200  Q
    ||||||| |||||||||| ||||||||||||||| ||||||  | |||||||||||| ||||||||||||||||||||  |||||||||||||||||| |    
T  48113253 accaatagcatcaatctcgtcaataaagattatacaaggcgaccgcttttttgcagcagcaaaaagatctctcacccttcgtgcaccaacaccaacaaac 48113352  T
Q  201 gtctcttcaaattcacgtcca 221  Q
     ||||||||||||||| ||||    
T  48113353 atctcttcaaattcacttcca 48113373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 48141696 - 48141585
Alignment:
Q  110 atcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttca 209  Q
    ||||||||||||||||||||||||| |||| |    |||||||||||||||||||||||||||||||||  ||||||||||| | |  | | ||||||||    
T  48141696 atcaatctcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcaccaacatccattagcatctcttca 48141597  T
Q  210 aattcacgtcca 221  Q
    ||||||| ||||    
T  48141596 aattcacttcca 48141585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 43871884 - 43871926
Alignment:
Q  101 accaataacatcaatctcatcaataaagattatagaaggcgca 143  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  43871884 accaatagcatcaatctcatcaacaaagattatagaaggcgca 43871926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48141805 - 48141744
Alignment:
Q  1 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtc 62  Q
    ||||||||||||| || |||||||||| |||||| | |||||  ||||||||||||||||||    
T  48141805 tcacaattatgccatcgttttgtttgaatccatcgagctcaaagagcatttgatttaaagtc 48141744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 25242616 - 25242724
Alignment:
Q  113 aatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaat 212  Q
    |||||||||||||||||||||| |||| |  | |||||||||||| ||||||||||||| ||||||  |||||||||||||||||| | |||||||||||    
T  25242616 aatctcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaacaaacatctcttcaaat 25242715  T
Q  213 tcacgtcca 221  Q
    |||| ||||    
T  25242716 tcacttcca 25242724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 25254268 - 25254157
Alignment:
Q  110 atcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttca 209  Q
    ||||||||||||||||||||||||| |||| |    |||||||||||||||||||||||||||||||||  ||||||||||| | |  | | ||||||||    
T  25254268 atcaatctcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcaccaacaaccattagcatctcttca 25254169  T
Q  210 aattcacgtcca 221  Q
    ||||||| ||||    
T  25254168 aattcacttcca 25254157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25254377 - 25254316
Alignment:
Q  1 tcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtc 62  Q
    ||||||||||||| || |||||||||| |||||| | |||||  ||||||||||||||||||    
T  25254377 tcacaattatgccatcgttttgtttgaatccatcgagctcaaagagcatttgatttaaagtc 25254316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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