View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16320_low_4 (Length: 258)
Name: NF16320_low_4
Description: NF16320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16320_low_4 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 13219260 - 13219508
Alignment:
| Q |
10 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagca |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13219260 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttagaagca |
13219359 |
T |
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| Q |
110 |
catattcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcat |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219360 |
catattcctccggggggtagattgggccgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcat |
13219459 |
T |
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| Q |
210 |
taggggtcattacttctttggtagctcaacacatgtactctttgcctgc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219460 |
taggggtcattacttctttggtagctcaacacatgtactctttgcctgc |
13219508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 13217036 - 13217095
Alignment:
| Q |
10 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
69 |
Q |
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| T |
13217036 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaa |
13217095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 238445 - 238207
Alignment:
| Q |
14 |
catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacata |
113 |
Q |
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| T |
238445 |
catcatttagctattgcatttatttttctcattgccggtcacatgtatcgaactaacttcggaattgggcacagtattaaagatcttttagaagcgcata |
238346 |
T |
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| Q |
114 |
ttcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattagg |
213 |
Q |
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||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| |
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| T |
238345 |
ctcctccggggggtcgattagggcgtgggcataagggcctttatgacacaatcaacaattcgattcattttcagttaggtcttgctctagcttctttagg |
238246 |
T |
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| Q |
214 |
ggtcattacttctttggtagctcaacacatgtactcttt |
252 |
Q |
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| T |
238245 |
ggttattacttccttagtagctcaacatatgtactcttt |
238207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 240669 - 240602
Alignment:
| Q |
14 |
catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgg |
81 |
Q |
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| T |
240669 |
catcatttagctattgctattcttttcctaatcgcaggtcatatgtataggaccaactggggtattgg |
240602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 10996334 - 10996415
Alignment:
| Q |
171 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactcttt |
252 |
Q |
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| T |
10996334 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactcttt |
10996415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 18177058 - 18176963
Alignment:
| Q |
10 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttaga |
105 |
Q |
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| T |
18177058 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga |
18176963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 39047942 - 39048001
Alignment:
| Q |
10 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
69 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
39047942 |
acatcatcatttagctattgcaattctttttctcattaccggtcatatgtatagaactaa |
39048001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 14541411 - 14541323
Alignment:
| Q |
13 |
tcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattt |
101 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||| || |||||||||| |||| |
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| T |
14541411 |
tcatcattttgctattgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatattt |
14541323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 32566683 - 32566650
Alignment:
| Q |
213 |
gggtcattacttctttggtagctcaacacatgta |
246 |
Q |
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| T |
32566683 |
gggtcattacttctttggtagctcaatacatgta |
32566650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 15664 - 15723
Alignment:
| Q |
10 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
69 |
Q |
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|||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
15664 |
acatcatcatctagctattgcaattctttttcacattgccagtcatatgtatagaactaa |
15723 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 39386263 - 39386308
Alignment:
| Q |
10 |
acatcatcatttagctattgcaattctttttctcattgctggtcat |
55 |
Q |
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|||||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
39386263 |
acatcatcatttagctattgtaattctttttcgcattgccggtcat |
39386308 |
T |
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