View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16320_low_5 (Length: 249)
Name: NF16320_low_5
Description: NF16320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16320_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 45189150 - 45188909
Alignment:
| Q |
11 |
acatcatctagaaaataagaatgaggacgccgccagccaccacatggaattttcaccacctggtaataccatatgcacatgatacgtagcta-------- |
102 |
Q |
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| T |
45189150 |
acatcacctagaaaataggaatgaggacgccgccagccaccacatggaattttcaccacctggtaataccatatgcacatgatacgtagctataatatct |
45189051 |
T |
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| Q |
103 |
-gtcatgtacgcagcaaaagatgaatattaactaagcagagtaaagagaaaaaa-tagtcaaagtaccttactctcattgactaaattccatacgatgaa |
200 |
Q |
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| T |
45189050 |
ggtgatgtacgcagcaacagatgaatattaactaagcagagtaaagagaaaaaaatagtcaaagtaccttattctcattgactaaattccatacgatgaa |
45188951 |
T |
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| Q |
201 |
atctacagatgcaaaacctgctgcatagcttcttgatgatgt |
242 |
Q |
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| T |
45188950 |
atctacagacgcaaaacctgctgcatagcttcttgatgatgt |
45188909 |
T |
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