View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16322_high_10 (Length: 333)

Name: NF16322_high_10
Description: NF16322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16322_high_10
NF16322_high_10
[»] chr1 (1 HSPs)
chr1 (14-333)||(41684673-41684992)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 41684992 - 41684673
Alignment:
Q  14 aatatcagtaaaagcatacctcaagaaagagatgggctttgaatatgacttccttggagctgttgctgtggctcacgttgcttttgtagttatgtttctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41684992 aatatcagtaaaagcatacctcaagaaagagatgggctttgaatatgacttccttggagctgttgctgtggctcacgttgcttttgtagttatgtttctt 41684893  T
Q  114 tttgtatttgcttatggcatcaaagtctttaatttccagaagaggtaaataatacagaataaaaaacagaaagagccaatagaaatgaagaacaaatgaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41684892 tttgtatttgcttatggcatcaaagtctttaatttccagaagaggtaaataatacagaatgaaaaacagaaagagccaatagaaatgaagaacaaatgaa 41684793  T
Q  214 agagagatatttaaacttaaagatttctgtatcataaatagcttgaataaacaaatatatttttggctttcattacctctttcacttgcagtctgggatt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  41684792 agagagatatttaaacttaaagatttctgtatcataaatagcttgaataaacaaatatatttttggctttcattacctctttcatttgcagtccgggatt 41684693  T
Q  314 tttcgcttgcgtctacttat 333  Q
    |||||||||| |||||||||    
T  41684692 tttcgcttgcatctacttat 41684673  T

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