View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16322_high_13 (Length: 327)
Name: NF16322_high_13
Description: NF16322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16322_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 2854022 - 2853703
Alignment:
| Q |
1 |
accaaaaagataagccatactcaacaatggcagaagattatgggtccacccttgaggataatgttttaaacagaatcctctacaatgttttaaatcacga |
100 |
Q |
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| T |
2854022 |
accaaaaagataagccatactcaacaatggcagaagattatgggtccacccttgaggataatgttttaaacagaatcctctacaatgttttaaatcatga |
2853923 |
T |
|
| Q |
101 |
tcgtggtaacggtcacagtcatagtgatggtcaagatggcttcacagtccttcatattgtggagaattttagtcaaatgaggctaatactaccttaatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853922 |
tcgtggtaacggtcacagtcatagtgatggtcaagatggcttcacagtccttcatattgtggagaattttagtcaaatgaggctaatactaccttaatcg |
2853823 |
T |
|
| Q |
201 |
cggtctaaaagttgttaaaaccatgatgtcagatcgacgtcaaaaaccaaaatgttgcggtccaaacctccagcgtgaacctattttaaaaccttggtct |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2853822 |
cggtcttaaagttgttaaaaccatgatgtcagatcgacgtcaaaaaccaaaatgttgcggtccaaacctccagcgtgaacctattttaaatccttggtct |
2853723 |
T |
|
| Q |
301 |
atatcttgtaatattcttcg |
320 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
2853722 |
atatcttgtaatatgcttcg |
2853703 |
T |
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