View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16322_high_1_N (Length: 476)
Name: NF16322_high_1_N
Description: NF16322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16322_high_1_N |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 476
Target Start/End: Original strand, 52108649 - 52109107
Alignment:
| Q |
15 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108649 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
52108748 |
T |
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| Q |
115 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108749 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
52108848 |
T |
|
| Q |
215 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
314 |
Q |
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| T |
52108849 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
52108948 |
T |
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| Q |
315 |
accccatgtaacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaattgtttgg |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52108949 |
accccatgtaacagtaggcatctcgtattccggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaa---tttgg |
52109045 |
T |
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| Q |
415 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacattaacattgcg |
476 |
Q |
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| T |
52109046 |
ggatttggaagtggatttggatttaattggtgagaaattagcttggaaacattaacattgcg |
52109107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 44519922 - 44520314
Alignment:
| Q |
15 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| |||||| |
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| T |
44519922 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacacta |
44520020 |
T |
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| Q |
115 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
214 |
Q |
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| T |
44520021 |
caacccaaaattaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
44520120 |
T |
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| Q |
215 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44520121 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcac |
44520220 |
T |
|
| Q |
315 |
accccatgtaacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaatt |
408 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
44520221 |
accccatgtaacagtaggcatctcgtattcaggaaatttggaatcttgggttccatagagattgaagaataaaaccctaaaattgtttgaaatt |
44520314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
415 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
466 |
Q |
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|||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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