View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16322_high_20 (Length: 306)
Name: NF16322_high_20
Description: NF16322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16322_high_20 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 11119817 - 11119528
Alignment:
| Q |
17 |
atggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11119817 |
atggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacctcaagccattcagtaatgatactgatg |
11119718 |
T |
|
| Q |
117 |
caactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgt |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |
|
|
| T |
11119717 |
caactgcaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattt |
11119618 |
T |
|
| Q |
217 |
tatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11119617 |
tatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtag |
11119528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 12206311 - 12206037
Alignment:
| Q |
20 |
gatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatgcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
12206311 |
gatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagacgtcaagccaatcaggaatgatactgatgcaa |
12206212 |
T |
|
| Q |
120 |
ctacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttat |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12206211 |
ccttaatgtctgattatgctcgtgataagaactgtgatgttgaa------------cctaaggtgaatttaggaaatgctataaatgttgctgatgttat |
12206124 |
T |
|
| Q |
220 |
cggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
12206123 |
cggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtag |
12206037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 32741521 - 32741232
Alignment:
| Q |
17 |
atggatgatacttttgatgaagggttagtaaggttatggtggaaacatgagagtggttcattggatgaagaccttaagccattcaggaatgatactgatg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32741521 |
atggatgatacttttgatgaatagttagtaaagctatggtggaaacatgagagtggttcattggatgaagacctcaagccattcaggaatgatactgatg |
32741422 |
T |
|
| Q |
117 |
caactacaatgtctaattatgctcgtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgt |
216 |
Q |
| |
|
||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
32741421 |
caactgcaatgtctgattatgctcgtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgt |
32741322 |
T |
|
| Q |
217 |
tatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtag |
306 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
32741321 |
tattggggaacaaaagggaaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtag |
32741232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University