View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16322_high_21 (Length: 301)
Name: NF16322_high_21
Description: NF16322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16322_high_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 26859922 - 26860211
Alignment:
| Q |
13 |
aaaatcaaagtggctgcatcaaatacggaatctatccaaaatcaaatttctacgataggtttttcggattcacttatggaccaagagaaacttgctatga |
112 |
Q |
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| T |
26859922 |
aaaatcaaagtggctgcatcaaatacggaatctatccaaaatcaaatttctacgataggtttttcggattcacttatggaccaggagaaacttgctatga |
26860021 |
T |
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| Q |
113 |
ttgaatttgacaaggctgtaaaatttgaggaatagttttggcaggaaaatgctaaagttaagtggcacattgagggtgatagaaatactccatattttca |
212 |
Q |
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| T |
26860022 |
ttgaatttgacaaggctgttaaatttgaggaatagttttggtaggaaaatgctaaagttaagtggcacattgagggtgatagaaatactccatattttca |
26860121 |
T |
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| Q |
213 |
caaaattgcaaaggtaaggtgtggtacc-nnnnnnnnttcacttctttgtcttggtgaaaatttaatcatgaattcctaacttggtgagt |
301 |
Q |
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| T |
26860122 |
caaaattgcaaaggtaaggtgtggtaccaaaacaaaattcacttctttgtcttggtgaaaatttaatcatgaattcctaacttggtgagt |
26860211 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 14142552 - 14142499
Alignment:
| Q |
147 |
gttttggcaggaaaatgctaaagttaagtggcacattgagggtgatagaaatac |
200 |
Q |
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| T |
14142552 |
gttttggcaggagaaggctaaagttaactggcacactgatggtgataggaatac |
14142499 |
T |
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