View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16322_high_4 (Length: 356)
Name: NF16322_high_4
Description: NF16322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16322_high_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 23 - 356
Target Start/End: Complemental strand, 37707603 - 37707270
Alignment:
| Q |
23 |
attgttattggacatctagcgaaattgcatttattttgcattcttgatttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgt |
122 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707603 |
attgttattggacatcatgcaaaattgcatttattttgcattctttatttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgt |
37707504 |
T |
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| Q |
123 |
ttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactggaatttgaataaatcgttattgttttgcgatacgttatttg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707503 |
ttttacttttggtaggaaaccagtgttgtaaaatagcggctctagtgtacgccatactggaatttgaataaatcgttattgttttgcgatacgttatttg |
37707404 |
T |
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| Q |
223 |
atatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707403 |
atatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaa |
37707304 |
T |
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| Q |
323 |
aaccaacaagatatttcacagtataatctactaa |
356 |
Q |
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|||| |||||||||||||| |||||||||||||| |
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| T |
37707303 |
aacccacaagatatttcacggtataatctactaa |
37707270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 356
Target Start/End: Complemental strand, 37443383 - 37443049
Alignment:
| Q |
23 |
attgttattggacatctagcgaaattgcatttattttgcattcttgatttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgt |
122 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37443383 |
attgttattggacatctagcaaaattgcatttattttgcattcttgatttaatatgaataatttgggttgtgcttctctgtactgtctttagtagaatgt |
37443284 |
T |
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| Q |
123 |
ttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactggaatttgaataaatcgttattgttttgcgatacgttatttg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37443283 |
ttttacttttggtaggaaaccagtgttgtaaaatagcagctatagtgtacgccatactggaatttgaataaatcgttattgttttgcgatacgttattcg |
37443184 |
T |
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| Q |
223 |
atatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgattctggtgaa |
322 |
Q |
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|||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37443183 |
atatagttttgttaaatagtggctctagtgtcactgtagcattgtagcttagcaaaatttgaacaaagtgttattttctgtgatctgcgattctggtgaa |
37443084 |
T |
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| Q |
323 |
aaccaacaagata-tttcacagtataatctactaa |
356 |
Q |
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||||||||||||| ||||| |||||||||||||| |
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| T |
37443083 |
aaccaacaagatattttcatggtataatctactaa |
37443049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 39647292 - 39647259
Alignment:
| Q |
180 |
tggaatttgaataaatcgttattgttttgcgata |
213 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
39647292 |
tggaatttgaataaatcgttattgttctgcgata |
39647259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
| Q |
257 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc |
310 |
Q |
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| T |
34925316 |
tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc |
34925263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 11501559 - 11501488
Alignment:
| Q |
230 |
tttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
301 |
Q |
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||||| ||||||||||| |||| |||||||||| | |||| ||| ||||||||||||| ||||||||||| |
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| T |
11501559 |
tttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc |
11501488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 4541583 - 4541645
Alignment:
| Q |
186 |
ttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctct |
248 |
Q |
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||||| |||||||||||||||||| ||| | |||||| || ||| |||| ||||||||||||| |
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| T |
4541583 |
ttgaacaaatcgttattgttttgcaatatgctatttggtacagtgttgtcaaatagtggctct |
4541645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
| Q |
277 |
gaatttgaacaaagtgttattttccatgatctgcgatt |
314 |
Q |
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| T |
10363462 |
gaatttgaacaaaatgctattttccatgatctgcgatt |
10363499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
| Q |
256 |
ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
301 |
Q |
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||||| ||||||||| ||||||||||| ||||||||| |||||||| |
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| T |
21901327 |
ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc |
21901372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
| Q |
257 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt |
314 |
Q |
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||||||| |||| | |||||||||||||||||| || |||||||| || ||||||||| |
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| T |
38434185 |
tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt |
38434242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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