View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16323_high_1_N (Length: 528)
Name: NF16323_high_1_N
Description: NF16323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16323_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 162 - 494
Target Start/End: Original strand, 13854912 - 13855240
Alignment:
| Q |
162 |
aaatttctgaaattttctataagtgaannnnnnnngtagttaacttttatgcatggtgcttccaacaacaacaaaaaagtggaacgtatatttaagaagt |
261 |
Q |
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| T |
13854912 |
aaatttctgaaattttctataagtgaattttttttgtagttaacttttatg----gtgcttccaacaacaacaaaaaagtggaacgtatatttaagaagt |
13855007 |
T |
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| Q |
262 |
gacatcaatacatttttcaacataaatttttcaacacatttttatatcttggttaagattcatatagatctctccaaatcatgtgggtctttttatagtc |
361 |
Q |
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| T |
13855008 |
gacatcaatacatttttcaacataaatttttcaagacatttttatatcttggttaagattcatatagatctctccaaatcatgtgggtctttttatagtc |
13855107 |
T |
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| Q |
362 |
aaagatatgatatttgagaagtgacatcaatagtgttactctctctaagtagaagtgtgttgtattactcgatcttacagtcaagaaatggtatttgcca |
461 |
Q |
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| T |
13855108 |
aatgatatgatatttgagaagtgacatcaatagtgttactctctctaagtagaagtgtgttgtattactcgatcttacagtcaagaaatgatatttgcca |
13855207 |
T |
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| Q |
462 |
aaaaaccaaggaaaacaaatattagtgtttcaa |
494 |
Q |
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| T |
13855208 |
aaaaaccaaggaaaacaaatattagtgtatcaa |
13855240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 13854714 - 13854874
Alignment:
| Q |
2 |
gtttatggcttctggaagcatgtttccaagcttatgagaagagaaactaggatgtatttggagatgttttactttctaaattcttgaataatagctatgc |
101 |
Q |
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| T |
13854714 |
gtttatggcttctggaagcatgtttccaagcttatgagaagagaaactaggatgtatttggagatgttttactttctaaattcttgaataatagttatgc |
13854813 |
T |
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| Q |
102 |
agcctcttcaatttgcatatattttaacatggtaaattcaattcaaaaacaaatacttggaa |
163 |
Q |
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| T |
13854814 |
agcctcttcaa-ttgcttatattttaacatggtaaattcaattcaaaaacaaatacttggaa |
13854874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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