View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16324_low_1 (Length: 375)

Name: NF16324_low_1
Description: NF16324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16324_low_1
NF16324_low_1
[»] chr7 (2 HSPs)
chr7 (19-367)||(48957883-48958231)
chr7 (31-60)||(23165548-23165577)
[»] chr1 (3 HSPs)
chr1 (24-60)||(1118936-1118972)
chr1 (31-67)||(6025960-6025996)
chr1 (31-59)||(41551544-41551572)
[»] chr3 (1 HSPs)
chr3 (24-67)||(38692425-38692468)
[»] chr2 (1 HSPs)
chr2 (29-60)||(28044711-28044742)
[»] chr4 (1 HSPs)
chr4 (24-66)||(47789191-47789233)
[»] chr8 (1 HSPs)
chr8 (24-57)||(5510115-5510148)
[»] chr6 (2 HSPs)
chr6 (31-60)||(2730835-2730864)
chr6 (31-59)||(26373118-26373146)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 48957883 - 48958231
Alignment:
Q  19 cagagatactcgatttagtacaaagtgttgtcaaatagtggcaatagcaatactatagcggtgttgtgtagcaacaaactagtattttatgtgatccagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48957883 cagagatactcgatttagtacaaagtgttgtcaaatagtggcaatagcaatgctatagcggtgttgtgtagcaacaaactagtattttatgtgatccagg 48957982  T
Q  119 attgccaatactggggtaaagataagaaatatattcaatctgacgaagttgggaaatgggaatctttgtagctctctgagttgggggttatattggttgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48957983 attgccaatactggggtaaagataagaaatatattcaatctgatgaagttgggaaatgggaatctttgtagctctctgagttggggattatattggttgt 48958082  T
Q  219 atagaaaattgataacacttggataatttttcgctacaggcattaccgtcttatgggcactggcagcagctctagtaccaccgatgcagaaaggcagtga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48958083 atagaaaattgataacacttggataatttttcgctacaggcattaccgtcttatgggcactggcagcagctctagtaccaccgatgcagaaaggcagtga 48958182  T
Q  319 aacagccagaaatcttcacattgcgctgaatacattgaatgttcatctc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48958183 aacagccagaaatcttcacattgcgctgaatacattgaatgttcttctc 48958231  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 23165577 - 23165548
Alignment:
Q  31 atttagtacaaagtgttgtcaaatagtggc 60  Q
    ||||||||||||||||||||||||||||||    
T  23165577 atttagtacaaagtgttgtcaaatagtggc 23165548  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 1118936 - 1118972
Alignment:
Q  24 atactcgatttagtacaaagtgttgtcaaatagtggc 60  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1118936 atactctatttagtacaaagtgttgtcaaatagtggc 1118972  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 6025996 - 6025960
Alignment:
Q  31 atttagtacaaagtgttgtcaaatagtggcaatagca 67  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  6025996 atttagtacaaaatgttgtcaaatagtggctatagca 6025960  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 41551544 - 41551572
Alignment:
Q  31 atttagtacaaagtgttgtcaaatagtgg 59  Q
    |||||||||||||||||||||||||||||    
T  41551544 atttagtacaaagtgttgtcaaatagtgg 41551572  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 38692468 - 38692425
Alignment:
Q  24 atactcgatttagtacaaagtgttgtcaaatagtggcaatagca 67  Q
    |||| |||||||||||||||||||||||||||| ||| ||||||    
T  38692468 atacacgatttagtacaaagtgttgtcaaatagcggctatagca 38692425  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 28044742 - 28044711
Alignment:
Q  29 cgatttagtacaaagtgttgtcaaatagtggc 60  Q
    ||||||||||||||||||||||||||||||||    
T  28044742 cgatttagtacaaagtgttgtcaaatagtggc 28044711  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 47789191 - 47789233
Alignment:
Q  24 atactcgatttagtacaaagtgttgtcaaatagtggcaatagc 66  Q
    |||||| |||||||||||| ||||||||||||||||| |||||    
T  47789191 atactctatttagtacaaactgttgtcaaatagtggctatagc 47789233  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 5510115 - 5510148
Alignment:
Q  24 atactcgatttagtacaaagtgttgtcaaatagt 57  Q
    |||| |||||||||||||||||||||||||||||    
T  5510115 atacgcgatttagtacaaagtgttgtcaaatagt 5510148  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 2730864 - 2730835
Alignment:
Q  31 atttagtacaaagtgttgtcaaatagtggc 60  Q
    ||||||||||||||||||||||||||||||    
T  2730864 atttagtacaaagtgttgtcaaatagtggc 2730835  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 26373118 - 26373146
Alignment:
Q  31 atttagtacaaagtgttgtcaaatagtgg 59  Q
    |||||||||||||||||||||||||||||    
T  26373118 atttagtacaaagtgttgtcaaatagtgg 26373146  T

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