View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16326_low_1 (Length: 448)
Name: NF16326_low_1
Description: NF16326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16326_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 276 - 436
Target Start/End: Complemental strand, 18629671 - 18629511
Alignment:
| Q |
276 |
accgcacagccatcaccttcagaaacacaagccctccttaaactaaaacaatctttaataaactcagacaaaatcttgtcaacatggataccaaacgtct |
375 |
Q |
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| T |
18629671 |
accgcacaaccatcaccttcagaaacacaagccctccttaaactaaaacaatctttaataaactcagacaaaatcttgtcaacatggataccaaacgtct |
18629572 |
T |
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| Q |
376 |
ctccatgttccggtacgtggatcggtgttatttgcttcgacaatgtcatcacaggccttca |
436 |
Q |
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| T |
18629571 |
ctccatgttccggtacgtggatcggtgttatttgcttcgacaatgtcatcacaggccttca |
18629511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 18629789 - 18629713
Alignment:
| Q |
155 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccagtggccactgctgccaacagca |
231 |
Q |
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| T |
18629789 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaatggccactgctgccaacagca |
18629713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 18629934 - 18629893
Alignment:
| Q |
10 |
acatcatcaccaatcttctctctctccacattaccaacatcc |
51 |
Q |
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| T |
18629934 |
acatcatcaccaatcttctctctctccacattaccaacatcc |
18629893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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