View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16326_low_3 (Length: 250)
Name: NF16326_low_3
Description: NF16326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16326_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 43131853 - 43132092
Alignment:
| Q |
2 |
ttgttttggttgtttaaccaatgcctcaacgatattggctaatattctccttaatttaaccgttgaaaataagaatatttagaatcacaacgtatttgat |
101 |
Q |
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| T |
43131853 |
ttgttttggttgtttaatcaatgcctcaacgacattggttaatattctccttagtttaactgttgaaaattagaatatttagaatcacaacgtatttgat |
43131952 |
T |
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| Q |
102 |
ccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcataattataattatgtctaacatttgtgaaggttcatattgctttaaggc |
201 |
Q |
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| T |
43131953 |
ccacctcaatttcatgtcttgaaatgacaa-tcaattcgatatgatgagcataattataattatgtctaacatttgtgaaggttcatattgctttaaggc |
43132051 |
T |
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| Q |
202 |
caggccattttattttaaatcatgaattatttccctttgct |
242 |
Q |
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| T |
43132052 |
taggccattttattttaaatcatgaattatttccctttgct |
43132092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 33635209 - 33635181
Alignment:
| Q |
2 |
ttgttttggttgtttaaccaatgcctcaa |
30 |
Q |
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| T |
33635209 |
ttgttttggttgtttaaccaatgcctcaa |
33635181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 18117473 - 18117406
Alignment:
| Q |
86 |
tcacaacgtatttgatccacctcaatttcatgtcttgaaatgacaattcaattcgatatggtgagcat |
153 |
Q |
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| T |
18117473 |
tcacaaggtctttgatccatcttaatttgatgtcctaaaatgacaattcaattagatatggtgagcat |
18117406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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