View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16327_low_1 (Length: 382)
Name: NF16327_low_1
Description: NF16327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16327_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 2685377 - 2685317
Alignment:
| Q |
305 |
aaaatggtttttgaagaattagcaattgatagcggaattgaggttcttaaatgtctaatat |
365 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2685377 |
aaaacggtttttgaagaattagcaattgatagcagaattgaggttcttaaatgtctaatat |
2685317 |
T |
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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 5477937 - 5477997
Alignment:
| Q |
305 |
aaaatggtttttgaagaattagcaattgatagcggaattgaggttcttaaatgtctaatat |
365 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5477937 |
aaaacggtttttgaagaattagcaattgatagcagaattgaggttcttaaatgtctaatat |
5477997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 26465465 - 26465414
Alignment:
| Q |
63 |
ttatgtggtactgaaaaataccttagctatgatgataatttggttgatggat |
114 |
Q |
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||||||| |||||||||||| |||||||||||||||| || |||||||||| |
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| T |
26465465 |
ttatgtgacactgaaaaatactttagctatgatgataaattagttgatggat |
26465414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 45008801 - 45008741
Alignment:
| Q |
305 |
aaaatggtttttgaagaattagcaattgatagcggaattgaggttcttaaatgtctaatat |
365 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45008801 |
aaaacggtttttgaagaattagcaattgatagcagaattgaggttcttaaatgtctaatat |
45008741 |
T |
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