View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16327_low_3 (Length: 339)

Name: NF16327_low_3
Description: NF16327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16327_low_3
NF16327_low_3
[»] chr3 (14 HSPs)
chr3 (142-328)||(22628816-22629002)
chr3 (23-328)||(22466208-22466513)
chr3 (31-327)||(22633720-22634016)
chr3 (31-328)||(22366189-22366483)
chr3 (123-328)||(22441093-22441298)
chr3 (141-328)||(22435003-22435190)
chr3 (31-328)||(22352096-22352393)
chr3 (123-316)||(22356335-22356528)
chr3 (31-92)||(22429847-22429908)
chr3 (123-167)||(24735027-24735071)
chr3 (123-314)||(22479854-22480045)
chr3 (142-314)||(22456892-22457064)
chr3 (38-91)||(22441008-22441061)
chr3 (123-167)||(22429918-22429962)
[»] chr4 (1 HSPs)
chr4 (26-251)||(29604070-29604295)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 22628816 - 22629002
Alignment:
Q  142 aagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttcatcaataaggatgtaac 241  Q
    ||||||||||||| ||||||||||||||||||| | |  ||||||  ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  22628816 aagtgttgaatgctagttggtaacgtcttgagttgagtagtgaaggttaaattgagctttttcagagagcccaatgaaccttcgtcaataacgatgtaac 22628915  T
Q  242 tcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcat 328  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22628916 tcaagttatcaagtccaaaaatagttagttccttcaaattcataaaccatccatcttgaaaatgtaacctttccaatttgtcttcat 22629002  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 22466208 - 22466513
Alignment:
Q  23 aagaagtatctacaaagggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctctgcaaaaattccacactcacacgtttgcaacg 122  Q
    ||||| ||||||||||||| |||||| ||||||||  |||||||||||| || || |||||||| |||||||  |||||||||||||  | |||   |      
T  22466208 aagaaatatctacaaagggaacttgcatgaaaatcggatgctcttttccgtcatcaggagcaatactctgcattaattccacactcattcctttcatata 22466307  T
Q  123 gagaacttcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcacct 222  Q
    |||||||||||| ||||| ||||| ||||||||||||||||| ||| ||||| ||||| |||||  ||| ||||||||||||||||| ||||||||||||    
T  22466308 gagaacttcaaggttgtgcaagtgatgaatgccagttggtaatgtcatgagttgggggttgaaggataagttgagctttttcagagaacccaatgcacct 22466407  T
Q  223 tcatcaataaggatgtaactcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgt 322  Q
    || || |||||||||| |||||||  ||  || | |  || |  |||||||||||||||| ||||||| ||||| | ||||||||  ||||| |||||||    
T  22466408 tcgtctataaggatgtgactcaaggaatagaaattagtaagatatagttccttcaaattcttaaaccacccatcctgaaaatgtatactttcaaatttgt 22466507  T
Q  323 cttcat 328  Q
    ||||||    
T  22466508 cttcat 22466513  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 22633720 - 22634016
Alignment:
Q  31 tctacaaagggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctctgcaaaaattccacactcacacgtttgca-acggagaact 129  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |  ||||||||||||||   || |||   |||||  |   || | || |||||||    
T  22633720 tctacaaagggcacttgcttgaatatccaatgctcttttccttcattaggagcaatgctctgtttaagttcataactcat-caaatgaagacagagaact 22633818  T
Q  130 tcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttcatcaa 229  Q
    ||||| |||||||||||||||||||||||||||||| || | |||  |||| ||   |  ||| |||||||| ||||||| |||||||||||||| ||||    
T  22633819 tcaagcttgtgtaagtgttgaatgccagttggtaacatcatcagttcggggatggctttcaaagtgagctttctcagagaacccaatgcaccttcgtcaa 22633918  T
Q  230 taaggatgtaactcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttca 327  Q
    ||||||||| |||||| |||   || ||||||||||  || | ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  22633919 taaggatgtgactcaacttaaagaaatcaaaaatagccaggttcttcaaattcataaaccatccatcttcaaaatgtaacctctccaatgtgttttca 22634016  T

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Target: chr3; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 22366189 - 22366483
Alignment:
Q  31 tctacaaagggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctctgcaaaaattccacactcacacgtttgcaa--cggagaac 128  Q
    ||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||||| | || ||||||||||| |  |  ||||  | ||||||    
T  22366189 tctacaaagggcacttgcttgaagatccaatgctcttttcctttatcaggagcaatgctctgtataagttccacactcata--tcagcaagccagagaac 22366286  T
Q  129 ttcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttcatca 228  Q
    |||||| || ||||||||||||||||||||||||||  || | ||| ||||| ||  || |||| |||| ||||||||||| | ||| |||||||| |||    
T  22366287 ttcaagcttttgtaagtgttgaatgccagttggtaaactcgtcagttgggggttgccgtataaagtgagttttttcagagaactcaacgcaccttcgtca 22366386  T
Q  229 ataaggatgtaactcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcat 328  Q
    |||||||||| |||||||||||  || | |  ||| |  |||||||| |||||| |||   ||||| ||| |||||||||||||||||||||||||||||    
T  22366387 ataaggatgtgactcaagttattgaaatgatcaatcgacagttcctttaaattcttaa---atccaacttgaaaatgtaacctttccaatttgtcttcat 22366483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 328
Target Start/End: Original strand, 22441093 - 22441298
Alignment:
Q  123 gagaacttcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcacct 222  Q
    |||||||||||| || |||||||||||||||||| ||||||||||| | ||| ||||| || |  |||| || ||| |||||||| | || |||||||||    
T  22441093 gagaacttcaagcttttgtaagtgttgaatgccacttggtaacgtcatcagttgggggatggaccctaattttagcattttcagacaaccgaatgcacct 22441192  T
Q  223 tcatcaataaggatgtaactcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgt 322  Q
    || ||||||||||| || ||||| ||||  || | ||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||    
T  22441193 tcgtcaataaggatatatctcaatttattgaaatgaaaaataattagttccttcaaattcgtaaaccatccaacttgaaaatgtaacctttcgaatttgt 22441292  T
Q  323 cttcat 328  Q
    ||||||    
T  22441293 cttcat 22441298  T

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Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 141 - 328
Target Start/End: Original strand, 22435003 - 22435190
Alignment:
Q  141 taagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttcatcaataaggatgtaa 240  Q
    |||||||||||||||||||||||||||| | |   ||||  || |   |||| |||||||||||||||| |||||||||||||| ||||||||||||| |    
T  22435003 taagtgttgaatgccagttggtaacgtcatcaacaggggaatgtaccataaagtgagctttttcagagaacccaatgcaccttcgtcaataaggatgtta 22435102  T
Q  241 ctcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcat 328  Q
    |||||| ||   || |||  || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22435103 ctcaagctacagaaatcacgaagatatagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcat 22435190  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 22352096 - 22352393
Alignment:
Q  31 tctacaaagggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctctgcaaaaattccacactcacacgtttgcaacggagaactt 130  Q
    |||||| |||||||||| ||||| |||||| | ||||||||||| || ||||||||||||||   || |||  |||||| |   |    |||||||||||    
T  22352096 tctacagagggcacttggttgaagatccaacgttcttttccttcatcaggagcaatgctctgtctaagttcttcactcatataatgaagacggagaactt 22352195  T
Q  131 caagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttcatcaat 230  Q
     ||| | ||||||||||||||||||||||||||||||| | ||| ||||  || |   |||| |||||||||||||||| |||||||||||||| |||||    
T  22352196 gaagctcgtgtaagtgttgaatgccagttggtaacgtcatcagttggggaatgtaccataaagtgagctttttcagagaacccaatgcaccttcgtcaat 22352295  T
Q  231 aaggatgtaactcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcat 328  Q
    |||||||| |||||| | ||  || |||  || |  ||||| |||||||||||||||| | || |||| ||||||||| ||||| || ||||||||||    
T  22352296 aaggatgtgactcaattcatggaaatcagcaagatatagtttcttcaaattcataaacaacccttcttgaaaatgtaaactttcgaaattgtcttcat 22352393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 22356335 - 22356528
Alignment:
Q  123 gagaacttcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcacct 222  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| | ||| ||  | ||  ||| ||| |||||||||||||||| ||||||||||||    
T  22356335 gagaacttcaagcttgtgtaagtgttgaatgccagttggtaaagtcatcagttggaagatggcgtcaaaagtgagctttttcagagaacccaatgcacct 22356434  T
Q  223 tcatcaataaggatgtaactcaagtt-atcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttcca 316  Q
    || ||||| ||||||| |||||| || |  ||||| |  || |  |||||||||||| ||| |||||||||||||||  |||||||| |||||||    
T  22356435 tcgtcaattaggatgtgactcaaattgaagaaatt-agcaagatatagttccttcaagttcttaaaccatccatcttggaaatgtaaactttcca 22356528  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 22429847 - 22429908
Alignment:
Q  31 tctacaaagggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctctg 92  Q
    |||||| |||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||    
T  22429847 tctacagagggcacttgcttgaagatccaatgctcttctccttcatcgggaacaatgctctg 22429908  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 24735027 - 24735071
Alignment:
Q  123 gagaacttcaagattgtgtaagtgttgaatgccagttggtaacgt 167  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  24735027 gagaacttgaagcttgtgtaagtgttgaatgccagttggtaacgt 24735071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 314
Target Start/End: Original strand, 22479854 - 22480045
Alignment:
Q  123 gagaacttcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcacct 222  Q
    |||||||||||| || |  ||||||||||||||||||||||| ||||||||  || ||  ||||  ||     |||||||| ||||| | ||| || |||    
T  22479854 gagaacttcaagctttttcaagtgttgaatgccagttggtaaagtcttgagatggcggaggaaggttagtgatagcttttttagagaacgcaacgctcct 22479953  T
Q  223 tcatcaataaggatgtaactcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttc 314  Q
    || || |||| ||||||| ||||||| || || ||   || |  ||||| ||||||||||  |||||||||||||| |||||||||||||||    
T  22479954 tcgtcgataatgatgtaattcaagttttccaaatcttcaagatatagttgcttcaaattctcaaaccatccatcttgaaaatgtaacctttc 22480045  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 314
Target Start/End: Original strand, 22456892 - 22457064
Alignment:
Q  142 aagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttcatcaataaggatgtaac 241  Q
    ||||||||||||||||||||||| ||||||||  || ||  ||||  ||     |||||||| ||||| | ||| || ||||| || |||| |||||||     
T  22456892 aagtgttgaatgccagttggtaaagtcttgagatggcggaggaaggttagtgatagcttttttagagaacgcaacgctccttcgtcgataatgatgtaat 22456991  T
Q  242 tcaagttatcaaattcaaaaatagttagttccttcaaattcataaaccatccatcttcaaaatgtaacctttc 314  Q
    ||||||| || || ||   || |  ||||| ||||||||||  |||||||||||||| |||||||||||||||    
T  22456992 tcaagttttccaaatcttcaagatatagttgcttcaaattctcaaaccatccatcttgaaaatgtaacctttc 22457064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 22441008 - 22441061
Alignment:
Q  38 agggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctct 91  Q
    |||||||||| ||||| |||||||||||||||||||| || | |||||| ||||    
T  22441008 agggcacttggttgaagatccaatgctcttttccttcatcagaagcaatactct 22441061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 22429918 - 22429962
Alignment:
Q  123 gagaacttcaagattgtgtaagtgttgaatgccagttggtaacgt 167  Q
    |||||||||||| |||||||||||||||||  ||| |||||||||    
T  22429918 gagaacttcaagcttgtgtaagtgttgaatatcagctggtaacgt 22429962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 29604070 - 29604295
Alignment:
Q  26 aagtatctacaaagggcacttgcttgaaaatccaatgctcttttccttcgtcgggagcaatgctctgcaaaaattccacactcacacgtttgcaacggag 125  Q
    |||| ||||||||||| ||||||||||| ||||||| ||||||||||| | ||||||||||||||||||  |||| |||||||| ||  |    ||||||    
T  29604070 aagtttctacaaagggtacttgcttgaagatccaatactcttttcctttgacgggagcaatgctctgcatgaatttcacactcatactctcaacacggag 29604169  T
Q  126 aacttcaagattgtgtaagtgttgaatgccagttggtaacgtcttgagtcggggggtgaagtctaaattgagctttttcagagagcccaatgcaccttca 225  Q
    ||||| ||| || |||||||||||||||| |||||||||| ||||||||   ||| |||    ||  ||||||||||| ||||| | ||  ||||||||     
T  29604170 aacttgaagcttctgtaagtgttgaatgcaagttggtaacatcttgagttcagggatgacaaatagtttgagctttttaagagaacacaccgcaccttcg 29604269  T
Q  226 tcaataaggatgtaactcaagttatc 251  Q
    |||||||||||| |||||||||||||    
T  29604270 tcaataaggatgcaactcaagttatc 29604295  T

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