View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16327_low_4 (Length: 330)
Name: NF16327_low_4
Description: NF16327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16327_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 34027491 - 34027813
Alignment:
| Q |
1 |
accctcagaacctctctccctcactgactatgcgctctctctcctctcaactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctacc |
100 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34027491 |
accctcagaacctctctccctaaccgactatgcactctctctcctctcaactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctacc |
34027590 |
T |
|
| Q |
101 |
gatcaccacctcacttatcccaccttcctccgccaaatcaaatctctatcttcattccttcaatcccacactactctctccaaagaccacgttgctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34027591 |
gatcaccacctcacttatcccaccttcctccgccaaatcaaatctctatcttcattccttcaatcccacactactctctccaaaggccacgttgctctca |
34027690 |
T |
|
| Q |
201 |
tcctcatcccttcttccatacacgtcccagtactctatttctccctcctctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34027691 |
tcctcatcccttcttccatacacgtccccgtactctatttctccctcctctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcaga |
34027790 |
T |
|
| Q |
301 |
gttatctcatctcgttcatctca |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34027791 |
gttatctcatctcgttcatctca |
34027813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 34017699 - 34018013
Alignment:
| Q |
9 |
aacctctctccctcactgactatgcgctctctctcctctcaactaccactgccgtctccaacaacaccaccgccctcatcgacgccgctaccgatcacca |
108 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
34017699 |
aacctctctccctcaccgaatatgcactctctctcctctccaccaccactgccgtgtccaacaacaccaccgccctcatcgacgccaccaccgaccacca |
34017798 |
T |
|
| Q |
109 |
cctcacttatcccaccttcctccgccaaatcaaatctctatcttcattccttcaatcccacactactctctccaaagaccacgttgctctcatcctcatc |
208 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
34017799 |
tctcacttacccaaccttcctccgccaaatcaaatccctctcttcattcctccaatcacacactactctatccaaaggccacgtcgctctcatcctcatc |
34017898 |
T |
|
| Q |
209 |
ccttcttccatacacgtcccagtactctatttctccctcctctccctcggcgtcaccatcgctcctgctaacccactctcctccccgtcagagttatctc |
308 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| |
|
|
| T |
34017899 |
ccttcttccatacatgtccccgtactctatttctccctcctctccctcggcgtcaccatcgctcctgccaatccactctcttcaccttcagagttatctc |
34017998 |
T |
|
| Q |
309 |
atctcgttcatctca |
323 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34017999 |
atctcgttcatctca |
34018013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University