View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16328_high_1 (Length: 487)
Name: NF16328_high_1
Description: NF16328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16328_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 137 - 468
Target Start/End: Original strand, 4850010 - 4850333
Alignment:
| Q |
137 |
cataatcaaaattttgaagtacagtgtacctggatcaagagcgaggataaagagccataaagcaacaacacggattgttcgtggttccatctgggtcgtg |
236 |
Q |
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| T |
4850010 |
cataatcaaaaatttgaagaacagtgtacctggatcaagagcgaggataaagagccataaagcaacaacatggattgttcgtggttccatctgggttgtg |
4850109 |
T |
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| Q |
237 |
cacttcttaaaatgtcagaaattcaaaagttgaagtacaagcacgaccgtgccctccaacaacgtagaaacaagcatgattgtgcgcttcagaagcacga |
336 |
Q |
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| T |
4850110 |
cacttcttaaaatgtcagaatttcaaaagttgaagtacaagcacgaccgtgccccccaacaccgtagaaataagcatgattgtgcgcttcagaagcacga |
4850209 |
T |
|
| Q |
337 |
ctttgcacctctcaaaacacaacaaaatgtcaaaagttggaaaggtgattatgaccgtgcacccttgaagcatgaccgtgcacccttgaagcacgaccgt |
436 |
Q |
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| T |
4850210 |
ctttgcacccctcaaaac--------atgtcaaaagttggaaaggtgatcatgaccgtgtacccttgaagcatgactgtgcacccttgaagcacgaccgt |
4850301 |
T |
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| Q |
437 |
gcgtcttgtgcagagaaaatagttgttacaac |
468 |
Q |
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| T |
4850302 |
gcgtcttgtgcagagaaaatagttgttacaac |
4850333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 185 - 416
Target Start/End: Original strand, 4863320 - 4863552
Alignment:
| Q |
185 |
aaagagccataaagcaacaacacggattgttcgtggttccatctgggtcgtgcacttcttaaaatgtcagaaattcaaaagttgaagtacaagcacgacc |
284 |
Q |
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| T |
4863320 |
aaagagccataaagcagcagcacggatggtccgtggttccatctaggtcgtggagttcttaaaatgtcaaaatttcaaaagttgaagtacaagcacaacc |
4863419 |
T |
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| Q |
285 |
gtgccctccaacaacgtagaaacaagcatgattgtgcgcttcagaagcacgac-tttgcacctctcaaaacacaacaaaatgtcaaaagttggaaaggtg |
383 |
Q |
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| T |
4863420 |
gtgtgccccaacacggtagaaacaagcatgattgtgcacttcagaagcacgacttttgcacccctcaaaacacaacaaaatgtcaaaagttggaaaggtg |
4863519 |
T |
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| Q |
384 |
attatgaccgtgcacccttgaagcatgaccgtg |
416 |
Q |
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| T |
4863520 |
agcatgaccgtgcacccttgaagcacgaccgtg |
4863552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 4849886 - 4849920
Alignment:
| Q |
13 |
atactcgttggcaagactgataagttgtagttaat |
47 |
Q |
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| T |
4849886 |
atactcgttggcaagactgataagttgtagttaat |
4849920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 31372088 - 31372046
Alignment:
| Q |
413 |
cgtgcacccttgaagcacgaccgtgcgtcttgtgcagagaaaa |
455 |
Q |
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| T |
31372088 |
cgtgcacccttgaagcacgaccgtgcgtcctgtgcagagaaaa |
31372046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 31372127 - 31372063
Alignment:
| Q |
353 |
acacaacaaaatgtcaaaagttggaaaggtgattatgaccgtgcacccttgaagcatgaccgtgc |
417 |
Q |
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| T |
31372127 |
acacatcagaatgtcaaaacttggaaaggtgagcacgatcgtgcacccttgaagcacgaccgtgc |
31372063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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