View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16328_high_2 (Length: 341)
Name: NF16328_high_2
Description: NF16328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16328_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 46229696 - 46230013
Alignment:
| Q |
11 |
atcatcagccagttagaaagagagaatattataaatatgacattttttgtgtttaatctgaacaactaaatgacggattcaaattggataagttccttct |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46229696 |
atcaccagccagttagaaagagagaatattataaatatgacattttttgtgtttaatctgaacaactaaatgacggattcaaattggataagttccttct |
46229795 |
T |
|
| Q |
111 |
cagctcagttagatctacactgtcggaattgataacctgtgaatcatcaagctcaataattaaagaaaaaactcaaaatattaattaaagtatgcacatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46229796 |
tagctcagttagatctacactgtcggaattgataacctgtgaatcatcaagctcaataattaaagaaaaaactcaaaatattaattaaagtatacacatg |
46229895 |
T |
|
| Q |
211 |
ttttgacaatt---nnnnnnnnnnnnnnntgtaaacaatatgtacctcacactgcacactatggagtaattttccattgacttgaatagaaaagcagcta |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46229896 |
ttttgacaatttaaaaaaaaaaaaaaaaatgtaaacaatatgtacctcacactgcacactatggagtaattttccattgacttgaatagaaaagcagcta |
46229995 |
T |
|
| Q |
308 |
acaacatcaagtccatat |
325 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46229996 |
acaacatcaagtccatat |
46230013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University